View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_low_89 (Length: 248)
Name: NF10841_low_89
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_89 |
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| [»] scaffold0727 (1 HSPs) |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: scaffold0727 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: scaffold0727
Description:
Target: scaffold0727; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 12 - 232
Target Start/End: Complemental strand, 6378 - 6157
Alignment:
| Q |
12 |
ttagtcgtttaatgtttgtgcatgatgattaagaaaataattaaaaattgtgttgatatctagttgatgtagggaaacatattaaaagaatgcatgaatc |
111 |
Q |
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||||||||||||||||||| |||||||||||||||||| ||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6378 |
ttagtcgtttaatgtttgttcatgatgattaagaaaatgattaattatt---ttgatatctagttgatgtaggaaaacatattaaaagaatgcatgaatc |
6282 |
T |
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| Q |
112 |
attaattgatttatgacatgtttatataattcaagtacatgtttattaatgatgctcccgagatgcatgtattatgttattatt----gtaagatatgca |
207 |
Q |
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| T |
6281 |
attaattgatttatgacatgtttatataattcaagtacatgtttgttaatgatgctcccgagatgcatgtattatgttattattgtacgtaagatatgca |
6182 |
T |
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| Q |
208 |
tcttatgcatttgtttgcatgtttt |
232 |
Q |
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|||||||||||||||| |||||||| |
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| T |
6181 |
tcttatgcatttgttttcatgtttt |
6157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 12 - 232
Target Start/End: Complemental strand, 23554257 - 23554036
Alignment:
| Q |
12 |
ttagtcgtttaatgtttgtgcatgatgattaagaaaataattaaaaattgtgttgatatctagttgatgtagggaaacatattaaaagaatgcatgaatc |
111 |
Q |
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||||||||||||||||||| |||||||||||||||||| ||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
23554257 |
ttagtcgtttaatgtttgttcatgatgattaagaaaatgattaattatt---ttgatatctagttgatgtaggaaaacatattaaaagaatgcatgaatc |
23554161 |
T |
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| Q |
112 |
attaattgatttatgacatgtttatataattcaagtacatgtttattaatgatgctcccgagatgcatgtattatgttattatt----gtaagatatgca |
207 |
Q |
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| T |
23554160 |
attaattgatttatgacatgtttatataattcaagtacatgtttgttaatgatgctcccgagatgcatgtattatgttattattgtacgtaagatatgca |
23554061 |
T |
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| Q |
208 |
tcttatgcatttgtttgcatgtttt |
232 |
Q |
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|||||||||||||||| |||||||| |
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| T |
23554060 |
tcttatgcatttgttttcatgtttt |
23554036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 17237277 - 17237319
Alignment:
| Q |
13 |
tagtcgtttaatgtttgtgcatgatgattaagaaaataattaa |
55 |
Q |
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| T |
17237277 |
tagtcatttaaggtttgtgcatgattattaagaaaataattaa |
17237319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 17176 - 17133
Alignment:
| Q |
12 |
ttagtcgtttaatgtttgtgcatgatgattaagaaaataattaa |
55 |
Q |
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|||||||||||| ||||||||||||| ||||||||||| ||||| |
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| T |
17176 |
ttagtcgtttaaggtttgtgcatgattattaagaaaatgattaa |
17133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 23168970 - 23169013
Alignment:
| Q |
12 |
ttagtcgtttaatgtttgtgcatgatgattaagaaaataattaa |
55 |
Q |
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|||||||||||| ||||||||| ||| ||||||||||||||||| |
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| T |
23168970 |
ttagtcgtttaaagtttgtgcacgattattaagaaaataattaa |
23169013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 21759966 - 21760008
Alignment:
| Q |
13 |
tagtcgtttaatgtttgtgcatgatgattaagaaaataattaa |
55 |
Q |
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||||||||||| ||||||||||||| ||||||||||| ||||| |
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| T |
21759966 |
tagtcgtttaaggtttgtgcatgattattaagaaaatgattaa |
21760008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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