View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10841_low_9 (Length: 447)

Name: NF10841_low_9
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10841_low_9
NF10841_low_9
[»] chr8 (2 HSPs)
chr8 (14-318)||(8683394-8683692)
chr8 (16-68)||(29749287-29749339)
[»] chr1 (5 HSPs)
chr1 (15-87)||(24808396-24808468)
chr1 (14-56)||(4541106-4541148)
chr1 (16-48)||(8344566-8344598)
chr1 (16-56)||(15707576-15707616)
chr1 (24-56)||(49825928-49825960)
[»] chr5 (3 HSPs)
chr5 (15-85)||(40677909-40677979)
chr5 (14-56)||(40877067-40877109)
chr5 (14-84)||(42440145-42440215)
[»] chr7 (5 HSPs)
chr7 (15-56)||(34925273-34925314)
chr7 (16-50)||(8558804-8558838)
chr7 (14-55)||(6518103-6518144)
chr7 (16-56)||(19130167-19130207)
chr7 (14-54)||(34501942-34501982)
[»] chr2 (5 HSPs)
chr2 (15-56)||(38434187-38434228)
chr2 (27-87)||(45071579-45071639)
chr2 (16-87)||(27242720-27242791)
chr2 (14-48)||(41947074-41947108)
chr2 (16-57)||(27678734-27678775)
[»] chr3 (2 HSPs)
chr3 (22-56)||(24276634-24276668)
chr3 (16-56)||(44622480-44622520)
[»] chr6 (3 HSPs)
chr6 (15-56)||(507832-507873)
chr6 (15-55)||(3247406-3247446)
chr6 (16-60)||(23137478-23137522)
[»] chr4 (4 HSPs)
chr4 (15-56)||(32427058-32427099)
chr4 (16-61)||(38596787-38596832)
chr4 (24-64)||(12909574-12909614)
chr4 (15-55)||(45554117-45554157)


Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 14 - 318
Target Start/End: Complemental strand, 8683692 - 8683394
Alignment:
Q  14 agaaaatagtagtttgttcaaattctgctatgctacagtgctagagcgttgctatggccgttatttgacaacacacagaacaatagcagttttctaaaat 113  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8683692 agaaaattgtagtttgttcaaattctgctatgctaaagtgctagagcgttgctatggccgttatttgacaacacacagaacaatagcagttttctaaaat 8683593  T
Q  114 agcgcctggcgccactatatccgctatttcacaacctacaagagacactgcccaaatttctgaaagcaatgagtcaagaaaggacaaaatttgctacctg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||    
T  8683592 agcgcctggcgccactatatccgctatttcacaacctacaagagacactgcccaaatttctgaaagcaatga------aaaggacaaaatttgctacctg 8683499  T
Q  214 taagcacataatggaagacgattcagaaagcaatgaatcaagaatcctttgattcctagctaaccaacgtgatctgaagtcactttctctgagtccttga 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8683498 taagcacataatggaagacgattcagaaagcaatgaatcaagaatcctttgattcctagctaaccaacgtgatctgaagtcactttctctgagtccttga 8683399  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 29749339 - 29749287
Alignment:
Q  16 aaaatagtagtttgttcaaattctgctatgctacagtgctagagcgttgctat 68  Q
    |||||| || |||||||||||| |||||||||||||||||| |||| ||||||    
T  29749339 aaaataatattttgttcaaattttgctatgctacagtgctatagcgctgctat 29749287  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 24808468 - 24808396
Alignment:
Q  15 gaaaatagtagtttgttcaaattctgctatgctacagtgctagagcgttgctatggccgttatttgacaacac 87  Q
    ||||| ||| |||||||||||||||||||||||||||||||  |||  ||||||| || ||||||||||||||    
T  24808468 gaaaacagtggtttgttcaaattctgctatgctacagtgctttagcactgctatgaccattatttgacaacac 24808396  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 4541106 - 4541148
Alignment:
Q  14 agaaaatagtagtttgttcaaattctgctatgctacagtgcta 56  Q
    |||||||||| |||||||||||||| |||||||||||| ||||    
T  4541106 agaaaatagttgtttgttcaaattccgctatgctacagcgcta 4541148  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 8344598 - 8344566
Alignment:
Q  16 aaaatagtagtttgttcaaattctgctatgcta 48  Q
    |||||||| ||||||||||||||||||||||||    
T  8344598 aaaatagtggtttgttcaaattctgctatgcta 8344566  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 15707576 - 15707616
Alignment:
Q  16 aaaatagtagtttgttcaaattctgctatgctacagtgcta 56  Q
    ||||||| ||||||||||||||| ||||||||| |||||||    
T  15707576 aaaatagcagtttgttcaaattccgctatgctatagtgcta 15707616  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 49825960 - 49825928
Alignment:
Q  24 agtttgttcaaattctgctatgctacagtgcta 56  Q
    ||||||||||||||||||||||| |||||||||    
T  49825960 agtttgttcaaattctgctatgcaacagtgcta 49825928  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 40677909 - 40677979
Alignment:
Q  15 gaaaatagtagtttgttcaaattctgctatgctacagtgctagagcgttgctatggccgttatttgacaac 85  Q
    ||||||||| ||||||||||||||||||||| ||  |||||| |||| || ||| |||| |||||||||||    
T  40677909 gaaaatagttgtttgttcaaattctgctatgatatggtgctatagcgctgttatagccgctatttgacaac 40677979  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 40877067 - 40877109
Alignment:
Q  14 agaaaatagtagtttgttcaaattctgctatgctacagtgcta 56  Q
    ||||||||||||||||||||||||||||| ||||| |||||||    
T  40877067 agaaaatagtagtttgttcaaattctgctttgctatagtgcta 40877109  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 42440215 - 42440145
Alignment:
Q  14 agaaaatagtagtttgttcaaattctgctatgctacagtgctagagcgttgctatggccgttatttgacaa 84  Q
    |||||| ||| |||||||||||||| |||||||||||||| || |||  |||||| |||  ||||||||||    
T  42440215 agaaaacagtggtttgttcaaattccgctatgctacagtgttatagcactgctatagcctctatttgacaa 42440145  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 34925273 - 34925314
Alignment:
Q  15 gaaaatagtagtttgttcaaattctgctatgctacagtgcta 56  Q
    |||||||| ||||||||||||||||||||||||||| |||||    
T  34925273 gaaaatagcagtttgttcaaattctgctatgctacaatgcta 34925314  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 8558804 - 8558838
Alignment:
Q  16 aaaatagtagtttgttcaaattctgctatgctaca 50  Q
    ||||||||||||||||||||||| |||||||||||    
T  8558804 aaaatagtagtttgttcaaattccgctatgctaca 8558838  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 6518103 - 6518144
Alignment:
Q  14 agaaaatagtagtttgttcaaattctgctatgctacagtgct 55  Q
    |||||||||| ||||||||||||||||||| |||||| ||||    
T  6518103 agaaaatagtggtttgttcaaattctgctacgctacattgct 6518144  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 19130167 - 19130207
Alignment:
Q  16 aaaatagtagtttgttcaaattctgctatgctacagtgcta 56  Q
    ||||||| |||||||||||| |||||||||||| |||||||    
T  19130167 aaaataggagtttgttcaaaatctgctatgctatagtgcta 19130207  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 34501942 - 34501982
Alignment:
Q  14 agaaaatagtagtttgttcaaattctgctatgctacagtgc 54  Q
    ||||||||||||||||||||  ||||||||||||| |||||    
T  34501942 agaaaatagtagtttgttcagtttctgctatgctatagtgc 34501982  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 38434228 - 38434187
Alignment:
Q  15 gaaaatagtagtttgttcaaattctgctatgctacagtgcta 56  Q
    |||||||| |||||||||||||||||||||| ||||||||||    
T  38434228 gaaaatagcagtttgttcaaattctgctatgttacagtgcta 38434187  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 45071579 - 45071639
Alignment:
Q  27 ttgttcaaattctgctatgctacagtgctagagcgttgctatggccgttatttgacaacac 87  Q
    |||||||||||||||||||||||||||||  |||  |||||| || | |||||||||||||    
T  45071579 ttgttcaaattctgctatgctacagtgctgtagcactgctatagctgctatttgacaacac 45071639  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 27242720 - 27242791
Alignment:
Q  16 aaaatagtagtttgttcaaattctgctatgctacagtgctagagcgttgctatggccgttatttgacaacac 87  Q
    ||||||| | ||| ||||||||||||||| ||||| ||||| || | || ||| ||||||||||||||||||    
T  27242720 aaaatagcaatttcttcaaattctgctatcctacaatgctatagtgctggtatagccgttatttgacaacac 27242791  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 41947074 - 41947108
Alignment:
Q  14 agaaaatagtagtttgttcaaattctgctatgcta 48  Q
    |||||||||| ||||||||||||||||||||||||    
T  41947074 agaaaatagtggtttgttcaaattctgctatgcta 41947108  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 27678775 - 27678734
Alignment:
Q  16 aaaatagtagtttgttcaaattctgctatgctacagtgctag 57  Q
    |||||||||||||||||||||| |||||||||| || |||||    
T  27678775 aaaatagtagtttgttcaaattttgctatgctatagcgctag 27678734  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 56
Target Start/End: Complemental strand, 24276668 - 24276634
Alignment:
Q  22 gtagtttgttcaaattctgctatgctacagtgcta 56  Q
    |||||||||||||||||||||||||||| ||||||    
T  24276668 gtagtttgttcaaattctgctatgctaccgtgcta 24276634  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 44622480 - 44622520
Alignment:
Q  16 aaaatagtagtttgttcaaattctgctatgctacagtgcta 56  Q
    ||||||| || |||||||||||||||||||||||| |||||    
T  44622480 aaaatagaagcttgttcaaattctgctatgctacaatgcta 44622520  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 507873 - 507832
Alignment:
Q  15 gaaaatagtagtttgttcaaattctgctatgctacagtgcta 56  Q
    |||||||| |||||||| ||||||||||||| ||||||||||    
T  507873 gaaaatagcagtttgtttaaattctgctatgttacagtgcta 507832  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 3247446 - 3247406
Alignment:
Q  15 gaaaatagtagtttgttcaaattctgctatgctacagtgct 55  Q
    ||||| ||| |||||||||||||| ||||||||||||||||    
T  3247446 gaaaacagtggtttgttcaaattccgctatgctacagtgct 3247406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 23137478 - 23137522
Alignment:
Q  16 aaaatagtagtttgttcaaattctgctatgctacagtgctagagc 60  Q
    |||||| |||||||||||||||||||||  | |||||||||||||    
T  23137478 aaaataatagtttgttcaaattctgctactcaacagtgctagagc 23137522  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 32427058 - 32427099
Alignment:
Q  15 gaaaatagtagtttgttcaaattctgctatgctacagtgcta 56  Q
    ||||||||||||||||||||||||||| |||  |||||||||    
T  32427058 gaaaatagtagtttgttcaaattctgccatgtgacagtgcta 32427099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 38596832 - 38596787
Alignment:
Q  16 aaaatagtagtttgttcaaattctgctatgctacagtgctagagcg 61  Q
    ||||||| |||||||||||||||||||| | |||||||||| ||||    
T  38596832 aaaatagcagtttgttcaaattctgctacgttacagtgctatagcg 38596787  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 12909574 - 12909614
Alignment:
Q  24 agtttgttcaaattctgctatgctacagtgctagagcgttg 64  Q
    |||||||||||||||||||| ||||||||| || |||||||    
T  12909574 agtttgttcaaattctgctacgctacagtgttatagcgttg 12909614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 45554117 - 45554157
Alignment:
Q  15 gaaaatagtagtttgttcaaattctgctatgctacagtgct 55  Q
    ||||||||| ||||| ||||||||||| |||||||||||||    
T  45554117 gaaaatagtggtttgctcaaattctgccatgctacagtgct 45554157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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