View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_low_90 (Length: 248)
Name: NF10841_low_90
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_90 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 2922510 - 2922269
Alignment:
| Q |
1 |
aggtcagtttgctccttggggaggagagaaaacagctgcccagcttcctggggattgggtttcaattggtcacagcagtcaatggttgtggtattctgtc |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2922510 |
aggtcagtttgctcctttgggaggagagaaaacagctgcccagcttcctggggattgggtttcaattggtcacagcagtcaatggttgtggtattctgtc |
2922411 |
T |
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| Q |
101 |
tatgcaaggtattgttctttacatatatatactcacaaaactgcctgattttgagacattcttaacaataagttactgaattgtttaccactctacccat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2922410 |
tatgcaaggtattgttctttacatatatatactcacaaaactgcctgattttgagacattcttaacaataagttactgaattgtttaccactctaaccat |
2922311 |
T |
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| Q |
201 |
atactcacaaaactgtctgaatttttgagacattcttctcac |
242 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2922310 |
atactcacaaaactgtctgaatttttgagacattcttatcac |
2922269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 36128718 - 36128829
Alignment:
| Q |
1 |
aggtcagtttgctccttggggaggagagaaaacagctgcccagcttcctggggattgggtttcaattggtcacagcagtcaatggttgtggtattctgtc |
100 |
Q |
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|||||| ||||||||| |||||| ||| | |||||||| ||||| ||||| ||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
36128718 |
aggtcaatttgctcctctgggaggcgagcagacagctgcacagctacctggagattgggtttcaattggacacagtagtcaatggttgtggtattctgtc |
36128817 |
T |
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| Q |
101 |
tatgcaaggtat |
112 |
Q |
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| T |
36128818 |
tatgcaaggtat |
36128829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 16008232 - 16008149
Alignment:
| Q |
30 |
aaacagctgcccagcttcctggggattgggtttcaattggtcacagcagtcaatggttgtggtattctgtctatgcaaggtatt |
113 |
Q |
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| T |
16008232 |
aaacagcagctcagcttccgggagattgggtttcaattggacacagcagtcagtggttgtggtattcggtatatgtaaggtatt |
16008149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 16013760 - 16013693
Alignment:
| Q |
44 |
cttcctggggattgggtttcaattggtcacagcagtcaatggttgtggtattctgtctatgcaaggta |
111 |
Q |
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|||||||| || |||||||| || |||||||||| ||||||| | |||||||| || ||||||||||| |
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| T |
16013760 |
cttcctggagactgggtttccatcggtcacagcactcaatggctttggtattcagtatatgcaaggta |
16013693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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