View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10841_low_94 (Length: 243)

Name: NF10841_low_94
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10841_low_94
NF10841_low_94
[»] chr5 (9 HSPs)
chr5 (1-225)||(35423874-35424098)
chr5 (1-225)||(35376615-35376839)
chr5 (1-220)||(35755017-35755236)
chr5 (1-219)||(35386215-35386433)
chr5 (1-219)||(35410876-35411094)
chr5 (1-224)||(35367063-35367286)
chr5 (1-213)||(35437216-35437428)
chr5 (7-71)||(35388480-35388544)
chr5 (44-87)||(10716904-10716947)
[»] chr1 (6 HSPs)
chr1 (1-220)||(10409758-10409977)
chr1 (1-219)||(10415456-10415674)
chr1 (11-224)||(10420338-10420551)
chr1 (43-87)||(39875856-39875900)
chr1 (43-87)||(39883979-39884023)
chr1 (43-87)||(39890933-39890977)
[»] chr7 (1 HSPs)
chr7 (1-224)||(29622893-29623115)
[»] chr2 (4 HSPs)
chr2 (1-221)||(30626274-30626493)
chr2 (1-221)||(30663225-30663444)
chr2 (1-221)||(30671905-30672124)
chr2 (44-87)||(17923367-17923410)
[»] chr8 (3 HSPs)
chr8 (94-220)||(15294045-15294171)
chr8 (94-220)||(15474414-15474540)
chr8 (2-75)||(13564822-13564895)
[»] chr3 (2 HSPs)
chr3 (1-108)||(1153949-1154056)
chr3 (175-219)||(1154061-1154105)
[»] chr6 (3 HSPs)
chr6 (44-87)||(12932481-12932524)
chr6 (44-87)||(12948846-12948889)
chr6 (46-87)||(12907394-12907435)


Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 35423874 - 35424098
Alignment:
Q  1 catgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatgttaaaccaagcaatgttcttcttgatgatgacggtgtgacccact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35423874 catgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatgttaaaccaagcaatgttcttcttgatgatgacggtgtgacccact 35423973  T
Q  101 taggagactttggcgtagctaggttcctccatggagctacagaatattcaagtaaaaatcaagttatttcctccacaattaaaggaactataggatatat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35423974 taggagactttggcgtagctaggttcctccatggagctacagaatattcaagtaaaaatcaagttatttcctccacaattaaaggaactataggatatat 35424073  T
Q  201 tcctcctggtaaagttctttctatg 225  Q
    |||||||||||||||||||||||||    
T  35424074 tcctcctggtaaagttctttctatg 35424098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 35376615 - 35376839
Alignment:
Q  1 catgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatgttaaaccaagcaatgttcttcttgatgatgacggtgtgacccact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  35376615 catgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatgttaagccaagcaatgttcttcttgatgatgacggtgtggcccact 35376714  T
Q  101 taggagactttggcgtagctaggttcctccatggagctacagaatattcaagtaaaaatcaagttatttcctccacaattaaaggaactataggatatat 200  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35376715 taggagactttggcttagctaggttcctccatggagctacagaatattcaagtaaaaatcaagttatttcctccacaattaaaggaactataggatatat 35376814  T
Q  201 tcctcctggtaaagttctttctatg 225  Q
    |||||||||||||||||||||||||    
T  35376815 tcctcctggtaaagttctttctatg 35376839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 35755017 - 35755236
Alignment:
Q  1 catgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatgttaaaccaagcaatgttcttcttgatgatgacggtgtgacccact 100  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||| |||||| |||| ||||||||||||||||||||||||||   |||  ||||||    
T  35755017 catgcattggattatcttcacaatgatacagaacaagtcgtagttcactgtgatattaagccaagcaatgttcttcttgatgatgaaattgtagcccact 35755116  T
Q  101 taggagactttggcgtagctaggttcctccatggagctacagaatattcaagtaaaaatcaagttatttcctccacaattaaaggaactataggatatat 200  Q
    | |||||||||||| |||||||| || | ||||||||||||||| ||||||||||| ||||||||| |||||| |||||||| ||||||||||||||| |    
T  35755117 tgggagactttggcctagctaggctcattcatggagctacagaacattcaagtaaagatcaagttaattcctctacaattaagggaactataggatatgt 35755216  T
Q  201 tcctcctggtaaagttcttt 220  Q
    ||||||||||||||||||||    
T  35755217 tcctcctggtaaagttcttt 35755236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 35386215 - 35386433
Alignment:
Q  1 catgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatgttaaaccaagcaatgttcttcttgatgatgacggtgtgacccact 100  Q
    |||||| | ||||||||||||||||||||||||||||  |||||||| |||||| |||| |||||||| ||||||||||| ||||||  |||  ||||||    
T  35386215 catgcacttgattatcttcacaatgatacagagcaagccgtagttcactgtgatcttaagccaagcaacgttcttcttgacgatgactttgtagcccact 35386314  T
Q  101 taggagactttggcgtagctaggttcctccatggagctacagaatattcaagtaaaaatcaagttatttcctccacaattaaaggaactataggatatat 200  Q
    | |||||||||||| | |||||| || | | |||| | |||||  ||||||||||| |||||||||||||||| || |||||||||||||||||||||||    
T  35386315 tgggagactttggcttggctaggatcattcttggaaccacagagcattcaagtaaagatcaagttatttcctctactattaaaggaactataggatatat 35386414  T
Q  201 tcctcctggtaaagttctt 219  Q
    |||||||||||||||||||    
T  35386415 tcctcctggtaaagttctt 35386433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 35410876 - 35411094
Alignment:
Q  1 catgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatgttaaaccaagcaatgttcttcttgatgatgacggtgtgacccact 100  Q
    |||||| | ||||||||||||||||| |||||||||| ||||||||| |||||| |||| || ||||| ||||||||||| ||||||  |||  ||||||    
T  35410876 catgcacttgattatcttcacaatgagacagagcaagctgtagttcactgtgatcttaagccgagcaacgttcttcttgacgatgactttgtagcccact 35410975  T
Q  101 taggagactttggcgtagctaggttcctccatggagctacagaatattcaagtaaaaatcaagttatttcctccacaattaaaggaactataggatatat 200  Q
    | |||||||||||| | |||||| || | | |||| | |||||  ||||||||||| ||||||||||||  || ||||||||||||||||||||||||||    
T  35410976 tgggagactttggcttggctaggctcattcttggaaccacagagcattcaagtaaagatcaagttattttttctacaattaaaggaactataggatatat 35411075  T
Q  201 tcctcctggtaaagttctt 219  Q
    |||||||||||||| ||||    
T  35411076 tcctcctggtaaagctctt 35411094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 35367063 - 35367286
Alignment:
Q  1 catgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatgttaaaccaagcaatgttcttcttgatgatgacggtgtgacccact 100  Q
    |||||| | |||||||||||||||| ||||||| ||    ||||||| |||||| |||| || ||||| |||||||| || ||||||  |||  ||||||    
T  35367063 catgcactcgattatcttcacaatggtacagagaaatccatagttcactgtgatattaagccgagcaacgttcttctggacgatgacactgtagcccact 35367162  T
Q  101 taggagactttggcgtagctaggttcctccatggagctacagaatattcaagtaaaaatcaagttatttcctccacaattaaaggaactataggatatat 200  Q
    | |||||||||||| |||||||| || | | |||| | | |||  ||||||||||| ||||||||| ||| ||||||||||| ||||||||||||||| |    
T  35367163 tgggagactttggcttagctaggctcattcttggaaccagagaccattcaagtaaagatcaagttaattcttccacaattaagggaactataggatatgt 35367262  T
Q  201 tcctcctggtaaagttctttctat 224  Q
    ||||||||||||||||||||||||    
T  35367263 tcctcctggtaaagttctttctat 35367286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 35437216 - 35437428
Alignment:
Q  1 catgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatgttaaaccaagcaatgttcttcttgatgatgacggtgtgacccact 100  Q
    ||||||||||||||||||||| || || |  |  ||| ||||||||| |||||| |||| ||||| ||||||||||| || ||||||  | |  |  |||    
T  35437216 catgcattggattatcttcaccataattcccatgaagctgtagttcactgtgatattaagccaagtaatgttcttctcgacgatgacattattgcttact 35437315  T
Q  101 taggagactttggcgtagctaggttcctccatggagctacagaatattcaagtaaaaatcaagttatttcctccacaattaaaggaactataggatatat 200  Q
    ||||||| |||||  |||| ||||||||  |||| |||||||    ||| |||||| ||||||||| |||  |  ||||| ||||||| ||||||||| |    
T  35437316 taggagattttgggttagcaaggttccttaatggggctacagggagttccagtaaagatcaagttagttcagctgcaattcaaggaaccataggatatgt 35437415  T
Q  201 tcctcctggtaaa 213  Q
    ||| || ||||||    
T  35437416 tcccccaggtaaa 35437428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 35388480 - 35388544
Alignment:
Q  7 ttggattatcttcacaatgatacagagcaagttgtagttcattgtgatgttaaaccaagcaatgt 71  Q
    |||||||||||||||||| ||   ||||||| |||||||||||||||| |||| |||| ||||||    
T  35388480 ttggattatcttcacaataattttgagcaagctgtagttcattgtgatattaagccaaacaatgt 35388544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 87
Target Start/End: Complemental strand, 10716947 - 10716904
Alignment:
Q  44 ttcattgtgatgttaaaccaagcaatgttcttcttgatgatgac 87  Q
    ||||||||||| |||| ||||||||||| |||||||||||||||    
T  10716947 ttcattgtgatcttaagccaagcaatgtccttcttgatgatgac 10716904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 10409977 - 10409758
Alignment:
Q  1 catgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatgttaaaccaagcaatgttcttcttgatgatgacggtgtgacccact 100  Q
    |||||||||||||||||||||| |||| |||||||||| || |||||| |||  ||||||||||||||||||||||| |||||||||  |||  | ||||    
T  10409977 catgcattggattatcttcacattgatgcagagcaagtggtggttcatagtggcgttaaaccaagcaatgttcttctcgatgatgacaatgtagctcact 10409878  T
Q  101 taggagactttggcgtagctaggttcctccatggagctacagaatattcaagtaaaaatcaagttatttcctccacaattaaaggaactataggatatat 200  Q
    |||||||||||||| |||||||| |  | | ||||||||||||| ||||||||||| |||||||||||||||| |||||||| ||||||||||||||| |    
T  10409877 taggagactttggcttagctaggctaattcgtggagctacagaacattcaagtaaagatcaagttatttcctctacaattaagggaactataggatatgt 10409778  T
Q  201 tcctcctggtaaagttcttt 220  Q
    |||||| |||||||||||||    
T  10409777 tcctcccggtaaagttcttt 10409758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 10415674 - 10415456
Alignment:
Q  1 catgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatgttaaaccaagcaatgttcttcttgatgatgacggtgtgacccact 100  Q
    |||||| | ||||||||||||||||||||||||||||  |||||||| |||||||||||  ||||||| ||||||||||| ||||||| |||  ||||||    
T  10415674 catgcacttgattatcttcacaatgatacagagcaagccgtagttcactgtgatgttaagtcaagcaacgttcttcttgacgatgacgttgtagcccact 10415575  T
Q  101 taggagactttggcgtagctaggttcctccatggagctacagaatattcaagtaaaaatcaagttatttcctccacaattaaaggaactataggatatat 200  Q
    | |||||||||||| |||||||| || | | |||||| |||||  ||||||||||| ||||||| |||||||| || |||||||||||||||||||||||    
T  10415574 tgggagactttggcttagctaggctcattcttggagccacagagcattcaagtaaagatcaagtcatttcctctactattaaaggaactataggatatat 10415475  T
Q  201 tcctcctggtaaagttctt 219  Q
    |||| ||||||||| ||||    
T  10415474 tcctactggtaaagctctt 10415456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 10420551 - 10420338
Alignment:
Q  11 attatcttcacaatgatacagagcaagttgtagttcattgtgatgttaaaccaagcaatgttcttcttgatgatgacggtgtgacccacttaggagactt 110  Q
    ||||||||||||||| |||||||||||   ||||||| |||||| |||| || ||||| |||||||| || ||||||  |||  | ||||| ||||||||    
T  10420551 attatcttcacaatggtacagagcaagccatagttcactgtgatattaagccgagcaacgttcttctggacgatgacattgtagctcacttgggagactt 10420452  T
Q  111 tggcgtagctaggttcctccatggagctacagaatattcaagtaaaaatcaagttatttcctccacaattaaaggaactataggatatattcctcctggt 210  Q
    |||| |||||||| || | | |||| | | |||  ||||||||||| ||||||||| ||| |||||||| || |||| |||||||||| |||||||||||    
T  10420451 tggcttagctaggctcattcttggaaccagagaccattcaagtaaagatcaagttaattcttccacaatcaagggaagtataggatatgttcctcctggt 10420352  T
Q  211 aaagttctttctat 224  Q
    ||||||||||||||    
T  10420351 aaagttctttctat 10420338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 39875900 - 39875856
Alignment:
Q  43 gttcattgtgatgttaaaccaagcaatgttcttcttgatgatgac 87  Q
    |||||||||||| | |||||||||||||| |||||||| ||||||    
T  39875900 gttcattgtgatttaaaaccaagcaatgtccttcttgacgatgac 39875856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 39884023 - 39883979
Alignment:
Q  43 gttcattgtgatgttaaaccaagcaatgttcttcttgatgatgac 87  Q
    |||||||||||| | |||||||||||||| |||||||| ||||||    
T  39884023 gttcattgtgatttaaaaccaagcaatgtccttcttgacgatgac 39883979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 39890977 - 39890933
Alignment:
Q  43 gttcattgtgatgttaaaccaagcaatgttcttcttgatgatgac 87  Q
    |||||||||||| | |||||||||||||| |||||||| ||||||    
T  39890977 gttcattgtgatttaaaaccaagcaatgtccttcttgaagatgac 39890933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 29623115 - 29622893
Alignment:
Q  1 catgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatgttaaaccaagcaatgttcttcttgatgatgacggtgtgacccact 100  Q
    |||||||||||||||||||||||||||| ||| |||| ||||||||| ||||||||||| |||||||||||||||||||||||||||  |||  ||||||    
T  29623115 catgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagccaagcaatgttcttcttgatgatgacattgtagcccact 29623016  T
Q  101 taggagactttggcgtagctaggttcctccatggagctacagaatattcaagtaaaaatcaagttatttcctccacaattaaaggaactataggatatat 200  Q
    | |||||||||||  |||||||| || |  ||||| |  || |  ||||||||||  ||||| ||| ||| ||||||||||| ||||||||||||||| |    
T  29623015 tgggagactttggattagctaggctcattaatggatcctcaaaccattcaagtaatgatcaaattacttcttccacaattaagggaactataggatatgt 29622916  T
Q  201 tcctcctggtaaagttctttctat 224  Q
    |||||||||| |||||||||||||    
T  29622915 tcctcctggt-aagttctttctat 29622893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 9e-48; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 30626274 - 30626493
Alignment:
Q  1 catgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatgttaaaccaagcaatgttcttcttgatgatgacggtgtgacccact 100  Q
    ||||||||||||||||||||||||| ||| ||| | ||||||||||| |||||||| ||||||| ||||||||||||||||||||||   ||  ||||||    
T  30626274 catgcattggattatcttcacaatggtactgagaatgttgtagttcaatgtgatgtgaaaccaaacaatgttcttcttgatgatgacatggtagcccact 30626373  T
Q  101 taggagactttggcgtagctaggttcctccatggagctacagaatattcaagtaaaaatcaagttatttcctccacaattaaaggaactataggatatat 200  Q
    | |||||||||||  | || |||||  | |||||||| |||| ||||||||||  | ||||||||| ||| ||||||||||| ||||||||||||||| |    
T  30626374 tgggagactttggattggcaaggttaattcatggagccacagcatattcaagtgtagatcaagttaattcgtccacaattaagggaactataggatatgt 30626473  T
Q  201 tcctcctggtaaagttctttc 221  Q
    |||||||||| ||||||||||    
T  30626474 tcctcctggt-aagttctttc 30626493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 30663225 - 30663444
Alignment:
Q  1 catgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatgttaaaccaagcaatgttcttcttgatgatgacggtgtgacccact 100  Q
    ||||||||||||||||||||||||| ||| ||| | ||||||||||| |||||||| ||||||| ||||||||||||||||||||||   ||  ||||||    
T  30663225 catgcattggattatcttcacaatggtactgagaatgttgtagttcactgtgatgtgaaaccaaacaatgttcttcttgatgatgacatggtagcccact 30663324  T
Q  101 taggagactttggcgtagctaggttcctccatggagctacagaatattcaagtaaaaatcaagttatttcctccacaattaaaggaactataggatatat 200  Q
    | |||||||||||  | || |||||  | |||||||| |||| ||||||||||  | ||||||||| ||| ||||||||||| ||||||||||||||| |    
T  30663325 tgggagactttggattggcaaggttaattcatggagccacagcatattcaagtgtagatcaagttaattcgtccacaattaagggaactataggatatgt 30663424  T
Q  201 tcctcctggtaaagttctttc 221  Q
    |||||||||| ||||||||||    
T  30663425 tcctcctggt-aagttctttc 30663444  T

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Target: chr2; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 30671905 - 30672124
Alignment:
Q  1 catgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatgttaaaccaagcaatgttcttcttgatgatgacggtgtgacccact 100  Q
    ||||||||||||||||||||||||| ||| ||| | ||||||||||| |||||||| ||||||| ||||||||||||||||||||||   ||  ||||||    
T  30671905 catgcattggattatcttcacaatggtactgagaatgttgtagttcactgtgatgtgaaaccaaacaatgttcttcttgatgatgacatggtagcccact 30672004  T
Q  101 taggagactttggcgtagctaggttcctccatggagctacagaatattcaagtaaaaatcaagttatttcctccacaattaaaggaactataggatatat 200  Q
    | |||||||||||  | || |||||  | |||||||| |||| ||||||||||  | ||||||||| ||| ||||||||||| ||||||||||||||| |    
T  30672005 tgggagactttggattggcaaggttaattcatggagccacagcatattcaagtgtagatcaagttaattcgtccacaattaagggaactataggatatgt 30672104  T
Q  201 tcctcctggtaaagttctttc 221  Q
    |||||||||| ||||||||||    
T  30672105 tcctcctggt-aagttctttc 30672124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 87
Target Start/End: Complemental strand, 17923410 - 17923367
Alignment:
Q  44 ttcattgtgatgttaaaccaagcaatgttcttcttgatgatgac 87  Q
    ||||||||||| | |||||||||||||| |||||||||||||||    
T  17923410 ttcattgtgatctaaaaccaagcaatgtccttcttgatgatgac 17923367  T

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Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 94 - 220
Target Start/End: Original strand, 15294045 - 15294171
Alignment:
Q  94 acccacttaggagactttggcgtagctaggttcctccatggagctacagaatattcaagtaaaaatcaagttatttcctccacaattaaaggaactatag 193  Q
    |||||||| |||||||||||| | |||||| || | |||||| | | |||  ||||||||||| || |||||||| |||| |  ||||||||||||||||    
T  15294045 acccacttgggagactttggcttggctaggctcattcatggaaccatagagcattcaagtaaagataaagttattgcctctaagattaaaggaactatag 15294144  T
Q  194 gatatattcctcctggtaaagttcttt 220  Q
    |||||||||||||||||||||||||||    
T  15294145 gatatattcctcctggtaaagttcttt 15294171  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 94 - 220
Target Start/End: Original strand, 15474414 - 15474540
Alignment:
Q  94 acccacttaggagactttggcgtagctaggttcctccatggagctacagaatattcaagtaaaaatcaagttatttcctccacaattaaaggaactatag 193  Q
    |||||||| |||||||||||| | |||||| || | |||||| | | |||  ||||||||||| || |||||||| |||| |  ||||||||||||||||    
T  15474414 acccacttgggagactttggcttggctaggctcattcatggaaccatagagcattcaagtaaagataaagttattgcctctaagattaaaggaactatag 15474513  T
Q  194 gatatattcctcctggtaaagttcttt 220  Q
    |||||||||||||||||||||||||||    
T  15474514 gatatattcctcctggtaaagttcttt 15474540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 13564822 - 13564895
Alignment:
Q  2 atgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatgttaaaccaagcaatgttctt 75  Q
    ||||||||||||||||||||||||||  ||||||||   ||| ||||||||||||||| || ||||| ||||||    
T  13564822 atgcattggattatcttcacaatgatgtagagcaagccttaggtcattgtgatgttaagccgagcaacgttctt 13564895  T

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Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 1153949 - 1154056
Alignment:
Q  1 catgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatgttaaaccaagcaatgttcttcttgatgatgacggtgtgacccact 100  Q
    |||||| | |||| |||||||||||||||| ||||||||  |||||| |||||| |||| |||||||||||||||||||||||||||  |||  ||||||    
T  1153949 catgcacttgattttcttcacaatgatacaaagcaagttacagttcactgtgatattaagccaagcaatgttcttcttgatgatgacaatgtagcccact 1154048  T
Q  101 taggagac 108  Q
    | ||||||    
T  1154049 tgggagac 1154056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 1154061 - 1154105
Alignment:
Q  175 acaattaaaggaactataggatatattcctcctggtaaagttctt 219  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  1154061 acaattaaaggaacaataggatatattcctcctggtaaagttctt 1154105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 87
Target Start/End: Original strand, 12932481 - 12932524
Alignment:
Q  44 ttcattgtgatgttaaaccaagcaatgttcttcttgatgatgac 87  Q
    ||||||||||| | |||||||||||||| |||||||||||||||    
T  12932481 ttcattgtgatctaaaaccaagcaatgtccttcttgatgatgac 12932524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 87
Target Start/End: Original strand, 12948846 - 12948889
Alignment:
Q  44 ttcattgtgatgttaaaccaagcaatgttcttcttgatgatgac 87  Q
    ||||||||||| | |||||||||||||| |||||||||||||||    
T  12948846 ttcattgtgatctaaaaccaagcaatgtccttcttgatgatgac 12948889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 12907394 - 12907435
Alignment:
Q  46 cattgtgatgttaaaccaagcaatgttcttcttgatgatgac 87  Q
    ||||||||| | |||||||||||||| |||||||||||||||    
T  12907394 cattgtgatctaaaaccaagcaatgtccttcttgatgatgac 12907435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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