View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_low_97 (Length: 241)
Name: NF10841_low_97
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_97 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 1025903 - 1025676
Alignment:
| Q |
18 |
attgaaaacaaaattaatggttgggttgacttgcaaggttaagagcaaaaaatgaagtgtccgttggcctaggatttggactcacgtctaaaattccatg |
117 |
Q |
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| T |
1025903 |
attgaaaacaaaattaatggttgggttgacttgcaaggttaagagcaaaaaatgaagtgtccgttggcctaggatttggactcacgtctaaaattccatg |
1025804 |
T |
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| Q |
118 |
atgttattgatgcaattata-----tataatacataatctcaatta-taatttaggaacttaagactataagttcagaaaattaatttaannnnnnngat |
211 |
Q |
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| T |
1025803 |
atgttattgatgcaattatataaagtataatacataatctcaattattaatttaggaacttaagactataagttcacaaaattaatttaatttttttgat |
1025704 |
T |
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| Q |
212 |
accattaatgtagattagacggttactg |
239 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
1025703 |
accattaatgtagattagacggttactg |
1025676 |
T |
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