View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10841_low_99 (Length: 240)
Name: NF10841_low_99
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_99 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 22971131 - 22971369
Alignment:
| Q |
1 |
caatgttctttgcgcaggttcgttctttgttctttcttttcaaagattttttagaatttagatacaaataatcaaataaagagagattaattgaatt--- |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22971131 |
caatgttctttgcgcaggttcgttctttgttctttcttttcaaagattttttagaatttagatacaaataatcaaataaagagagattaattgaattgaa |
22971230 |
T |
|
| Q |
98 |
---gaaattgaattgttgttgtttgattcacattgttacagaatcacggactcttcctcctctcggcagcgcagatattcttggtgttcccgtcactcct |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22971231 |
attgaaattgaattgttgttgtttgattcacattgttacagaatcacggactcttcctcctctcggcagcgcagatattcttggtgttcccgtcactcct |
22971330 |
T |
|
| Q |
195 |
tcaggaacaggtgcttgattcattttctgttctctgctt |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22971331 |
tcaggaacaggtgcttgattcattttctgttctatgctt |
22971369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 1131380 - 1131159
Alignment:
| Q |
1 |
caatgttctttgcgcaggttcgttctttgttctttcttttcaaagattttttagaatttagatacaaataatcaaataaagagagattaattgaattgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1131380 |
caatgttctttgcgcaggttcgttctttattctttcttttcaaagattctttagaatttagatacaaataatcaaatacagagagattaattgaattg-- |
1131283 |
T |
|
| Q |
101 |
attgaattgttgttgtttgattcacattgttacagaatcacggactcttcctcctctcggcagcgcagatattcttggtgttcccgtcactccttcagga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1131282 |
---------ttgttgtttgattcacattgttacagaatcacggactcttcctcctctcggcagcgcagatattcttggtgttcccgtcactccttcagga |
1131192 |
T |
|
| Q |
201 |
acaggtgcttgattcattttctgttctctgctt |
233 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
|
|
| T |
1131191 |
acaggtgcttgattcattttctgttctatgctt |
1131159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University