View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10842_high_1 (Length: 430)
Name: NF10842_high_1
Description: NF10842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10842_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 11 - 417
Target Start/End: Original strand, 1261856 - 1262262
Alignment:
| Q |
11 |
cataggagtaacacttgtggaggtaagtcttgtccaaatgctttgtgatgaagttagagaataaattttcttaatgagtctcaaaagttaataaatgcag |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
1261856 |
cataggagtaacacttgtggaggtaagtcttgtccaaatgctttgtgatgaagttagagaataaattttcttaattagtctcaaaaattaataaatgcag |
1261955 |
T |
|
| Q |
111 |
ggagaacttgagcataatcaaattgtggcagttattaaacaagtagacattgtgatatgtacttttgcttatcctcaagtgatggagcaactcaaaatta |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1261956 |
ggagaacttgagcataatcaaattgtggcagttattaaacaagcagacattgtgatatgtacttttgcttatcctcaagtgatggagcaactcaaaatta |
1262055 |
T |
|
| Q |
211 |
ttgaagctgtcaaagttgctggtaatattaaggtaatgaatatttccaaattcatatatatctataaggaaagtgtttctcctaaaaatagatgaaatta |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1262056 |
ttgaagctgtcaaagttgctggtaatattaaggtaatgaatatttccaaattcatatatatttataaggaaagtgtttctcctaaaaatagatgaaatta |
1262155 |
T |
|
| Q |
311 |
ccccccttctcttttgattttcttttcaatcattgatcgataattattacttcctttggtacaattgataagagataattggatcaacaaaagtcgatgt |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1262156 |
ccccccttctcttttgattttcttttcaatcactgattgataattattacttcctctggtacaattgataagagataattggatcaacaaaaatcgatgt |
1262255 |
T |
|
| Q |
411 |
acatggt |
417 |
Q |
| |
|
||||||| |
|
|
| T |
1262256 |
acatggt |
1262262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 106 - 244
Target Start/End: Complemental strand, 1338598 - 1338460
Alignment:
| Q |
106 |
tgcagggagaacttgagcataatcaaattgtggcagttattaaacaagtagacattgtgatatgtacttttgcttatcctcaagtgatggagcaactcaa |
205 |
Q |
| |
|
|||||||||||||||||||| | || |||||| ||| ||||| ||||||||||||||||||||||| ||| | || || |||||| ||||||||||||| |
|
|
| T |
1338598 |
tgcagggagaacttgagcatgaccagattgtgaaagtgattaagcaagtagacattgtgatatgtacctttccatacccacaagtgttggagcaactcaa |
1338499 |
T |
|
| Q |
206 |
aattattgaagctgtcaaagttgctggtaatattaaggt |
244 |
Q |
| |
|
|||||| || ||| | ||||||||||| ||||| ||||| |
|
|
| T |
1338498 |
aattatagatgctattaaagttgctggcaatatcaaggt |
1338460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 106 - 245
Target Start/End: Complemental strand, 1323859 - 1323720
Alignment:
| Q |
106 |
tgcagggagaacttgagcataatcaaattgtggcagttattaaacaagtagacattgtgatatgtacttttgcttatcctcaagtgatggagcaactcaa |
205 |
Q |
| |
|
|||||||||||||||| ||| | || ||||| ||| || ||| ||| |||||||||||||||||| ||| | ||||| |||||||||||||||||||| |
|
|
| T |
1323859 |
tgcagggagaacttgaacatgaccagattgttagagtcataaaagaagcagacattgtgatatgtacctttccatatccgcaagtgatggagcaactcaa |
1323760 |
T |
|
| Q |
206 |
aattattgaagctgtcaaagttgctggtaatattaaggta |
245 |
Q |
| |
|
|||| | || ||| ||||||||||||||||||| |||||| |
|
|
| T |
1323759 |
aattgtagatgctatcaaagttgctggtaatatcaaggta |
1323720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University