View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10842_high_2 (Length: 389)
Name: NF10842_high_2
Description: NF10842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10842_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 7 - 382
Target Start/End: Original strand, 37159684 - 37160059
Alignment:
| Q |
7 |
ggttggccttgcatttatattgcaatatttgtaaaggaaaggcattggtaaaaagaaaagacagattgctacttgcttaaagcggcatcaaagtctgatt |
106 |
Q |
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| T |
37159684 |
ggttggccttgcatttatatagcaatatttgtaaaggaaaggcattgataaagagaaaagacagattactacttgcttaaagcggcatcaaagtctgatt |
37159783 |
T |
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| Q |
107 |
ccttattatagttgaatccatcgtcatatccaaattcctctttaataagcttcacccaaaaatccaaaataaactgtaacttgtaagtttcaagttgtaa |
206 |
Q |
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| T |
37159784 |
ccttattgtagttgaatccgtcgtcatatccaaattcctctttaataagcttcacctaaaaatccaaaataaactgtaacttgtaagtttcaagttgtaa |
37159883 |
T |
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| Q |
207 |
gtaattttgcgtattttttacatacataaagatggatcctcaaacaatttcttcaatccttcattacaagggtgagttagtgacatgtgtaagtgtaact |
306 |
Q |
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| T |
37159884 |
gtaattttgtgtattttttacatacataaagatggatcctcaaacaatttcttcaatccttcattacaagggtgagttagtgacatgtttaagtgtaact |
37159983 |
T |
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| Q |
307 |
atgttttannnnnnncaatacactaacacatgttgtaactgtttttgttttaatttatgtacaaaccaaatctgtg |
382 |
Q |
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| T |
37159984 |
gtgttttgtttttttcaatacacaaacacatgttgtaactgtttttgttttaattgatgtacaaaccaaatctgtg |
37160059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 76 - 194
Target Start/End: Original strand, 37153371 - 37153489
Alignment:
| Q |
76 |
tacttgcttaaagcggcatcaaagtctgattccttattatagttgaatccatcgtcatatccaaattcctctttaataagcttcacccaaaaatccaaaa |
175 |
Q |
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| T |
37153371 |
tacttgcttaaagcggcgtcaaaatctgattccgcattatagttgaaaccgtcgtcatatccaaattcctctttaatgaggttgacctaaaaaaaccaaa |
37153470 |
T |
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| Q |
176 |
taaactgtaacttgtaagt |
194 |
Q |
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| T |
37153471 |
aaaagtgtaacttgtaagt |
37153489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 77 - 162
Target Start/End: Original strand, 37147901 - 37147986
Alignment:
| Q |
77 |
acttgcttaaagcggcatcaaagtctgattccttattatagttgaatccatcgtcatatccaaattcctctttaataagcttcacc |
162 |
Q |
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| T |
37147901 |
acttgcttaaagcagcatcaaaatctgattctatattgtagttgaatccatcatcatatccaaatttctctttaatgagcttcacc |
37147986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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