View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10842_high_6 (Length: 265)
Name: NF10842_high_6
Description: NF10842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10842_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 14334108 - 14333866
Alignment:
| Q |
11 |
cagagactgaagacgtgaagtttgttgagaatttaacaacctttgaactgaaaagttcaagatttgatgaagaattaatgatggaatttcaaaagaaaag |
110 |
Q |
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| T |
14334108 |
cagaaactgaagacgtgaagtttgttgagaatttaacaacctttgaactgaaaagttcaagatttgatgaagaattaatgatggaatttcaaaagaaaag |
14334009 |
T |
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| Q |
111 |
gtatgtgacgttcgcgaatccaccgtcagtttctcatgtcatgttacctcaaggtcatcaaggtgttgagaagttggaaaggcacccttctcttaggaag |
210 |
Q |
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| T |
14334008 |
gtatgtgacgttcgcgaatccaccgtcagtttctcatgtcatgttacctcaaggtcatcaaggtgttgagaagttggaaaggcacccttctcttaggaag |
14333909 |
T |
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| Q |
211 |
aagaa---gaagtcattgatttcacttattggaggcatatttt |
250 |
Q |
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| T |
14333908 |
aagaagaagaagtcattgattccacttattggaggcatatttt |
14333866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 11 - 242
Target Start/End: Complemental strand, 53089399 - 53089174
Alignment:
| Q |
11 |
cagagactgaagacgtgaagtttgttgagaatttaacaacctttgaactgaaaagttcaagatttgatgaagaattaatgatggaatttcaaaagaaaag |
110 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
53089399 |
cagaaactgaagacgtgaagtttgttgagaatttaacaacctttgaagtgaaaagttcaagatttgatgaagaattaatgatggagtttcaaaagaaaag |
53089300 |
T |
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| Q |
111 |
gtatgtgacgttcgcgaatccaccgtcagtttctcatgtcatgttacctcaaggtcatcaaggtgttgagaagttggaaaggcacccttctcttag---g |
207 |
Q |
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| T |
53089299 |
gtatgtgacgttcgcgaatccaccgtctgtttctcatgtgatgttacctca---------aggtgttgagaagttggaaaggcacccttctcttaggaag |
53089209 |
T |
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| Q |
208 |
aagaagaagaagtcattgatttcacttattggagg |
242 |
Q |
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| T |
53089208 |
aagaagaagaagtcattgattccacttataggagg |
53089174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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