View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10842_high_8 (Length: 240)

Name: NF10842_high_8
Description: NF10842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10842_high_8
NF10842_high_8
[»] chr5 (4 HSPs)
chr5 (18-240)||(17882684-17882906)
chr5 (34-226)||(15017394-15017586)
chr5 (18-240)||(15050147-15050369)
chr5 (18-240)||(14775311-14775533)
[»] chr1 (1 HSPs)
chr1 (18-240)||(36874208-36874430)


Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 17882684 - 17882906
Alignment:
Q  18 atatccaaacctcctgagcacagtccatgttgtctcaagaggccctttttctatgaaaaggacatgaagaaatagaaaccctgtcaaagtaagtcctcgt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  17882684 atatccaaacctcctgagcacagtccatgttgtctcaagaggccctttttctatgaaaaggacatgaagaaatagaaaccctgtcaaagtaattcctcgt 17882783  T
Q  118 tcattcacaccttcagacaattctttttgcacaaccttctttacatttgcaatttcccatggttgcataggagcattgaaacatacaacctgtagatagt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  17882784 tcattcacaccttcagacaattctttttgcacaaccttctttacatttgcaatttcccatggttgcataggagcattgaaacatacagcctgtagatagt 17882883  T
Q  218 attgttagaagtttcacaaatct 240  Q
    |||||||||||||||||||||||    
T  17882884 attgttagaagtttcacaaatct 17882906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 34 - 226
Target Start/End: Original strand, 15017394 - 15017586
Alignment:
Q  34 agcacagtccatgttgtctcaagaggccctttttctatgaaaaggacatgaagaaatagaaaccctgtcaaagtaagtcctcgttcattcacaccttcag 133  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||  |||||||||||||||||||||| ||||| |    
T  15017394 agcacagtccatgttgcctcaagaggccctttttctatgaaaagggcatgaagaaatagaaatcctgttgaagtaagtcctcgttcattcacgccttctg 15017493  T
Q  134 ac-aattctttttgcacaaccttctttacatttgcaatttcccatggttgcataggagcattgaaacatacaacctgtagatagtattgttaga 226  Q
    || |||||||||| |||||||| ||||||||    ||||||   ||| | || ||||||||||||||||  |||||||||||||| | ||||||    
T  15017494 acaaattcttttt-cacaacctcctttacatccaaaatttcatgtggcttcagaggagcattgaaacatctaacctgtagatagtttagttaga 15017586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 15050147 - 15050369
Alignment:
Q  18 atatccaaacctcctgagcacagtccatgttgtctcaagaggccctttttctatgaaaaggacatgaagaaatagaaaccctgtcaaagtaagtcctcgt 117  Q
    |||||||||| ||||||| || |||||||||| |||| ||||||| ||||| |||||||||  ||||||| ||||||| | |||||| |||||| |||||    
T  15050147 atatccaaacttcctgagtacggtccatgttgcctcaggaggccccttttccatgaaaagggtatgaagatatagaaatcatgtcaaggtaagttctcgt 15050246  T
Q  118 tcattcacaccttcagacaattctttttgcacaaccttctttacatttgcaatttcccatggttgcataggagcattgaaacatacaacctgtagatagt 217  Q
    |||||||||||||||||||| | | |||||||||||||||||||||  | |||||| ||| ||| || || ||  |||||||||  ||||||| ||||||    
T  15050247 tcattcacaccttcagacaaatttgtttgcacaaccttctttacatccgaaatttcacattgttccaaagaagagttgaaacatttaacctgtggatagt 15050346  T
Q  218 attgttagaagtttcacaaatct 240  Q
     | ||||||  ||||||||||||    
T  15050347 ttagttagatttttcacaaatct 15050369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 14775311 - 14775533
Alignment:
Q  18 atatccaaacctcctgagcacagtccatgttgtctcaagaggccctttttctatgaaaaggacatgaagaaatagaaaccctgtcaaagtaagtcctcgt 117  Q
    |||||||||| |||||||||| ||||||||| ||||| | |||  |||||||| ||| ||| | |||||| ||| ||| |||| ||||| |||||| ||     
T  14775311 atatccaaacttcctgagcacggtccatgttttctcacggggcattttttctaagaagagggcgtgaagagatataaatcctgccaaagaaagtccccgc 14775410  T
Q  118 tcattcacaccttcagacaattctttttgcacaaccttctttacatttgcaatttcccatggttgcataggagcattgaaacatacaacctgtagatagt 217  Q
    |||||||||||||||| ||||| |||| |||||||||||||||||     ||||||  ||||||| | ||||||||| ||||||  |||||||||| |||    
T  14775411 tcattcacaccttcaggcaatttttttcgcacaaccttctttacaaccaaaatttcggatggttgaaaaggagcattaaaacatttaacctgtagagagt 14775510  T
Q  218 attgttagaagtttcacaaatct 240  Q
     | ||||||  ||||||||||||    
T  14775511 ttagttagatttttcacaaatct 14775533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 36874430 - 36874208
Alignment:
Q  18 atatccaaacctcctgagcacagtccatgttgtctcaagaggccctttttctatgaaaaggacatgaagaaatagaaaccctgtcaaagtaagtcctcgt 117  Q
    |||||| ||| | ||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||    
T  36874430 atatccgaactttctgagcacagtccatgtagtctcaagacgccctttttctatgaaaagggcatgaagaaatagaaatcccgtcaaagtaagtcctcgt 36874331  T
Q  118 tcattcacaccttcagacaattctttttgcacaaccttctttacatttgcaatttcccatggttgcataggagcattgaaacatacaacctgtagatagt 217  Q
    || || ||||||||||||||||  | |||||||||||||||||||    |||||||   |||||||| |||||| |||||||||  |||||||| |||||    
T  36874330 tcgttaacaccttcagacaatttatcttgcacaaccttctttacacccacaatttctgctggttgcagaggagcgttgaaacatctaacctgtatatagt 36874231  T
Q  218 attgttagaagtttcacaaatct 240  Q
     | ||||||  ||||||||||||    
T  36874230 ttggttagatttttcacaaatct 36874208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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