View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10842_high_9 (Length: 240)

Name: NF10842_high_9
Description: NF10842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10842_high_9
NF10842_high_9
[»] chr2 (12 HSPs)
chr2 (1-224)||(39216073-39216296)
chr2 (1-205)||(39162283-39162486)
chr2 (1-205)||(39206708-39206911)
chr2 (67-205)||(39370603-39370742)
chr2 (13-224)||(39388520-39388727)
chr2 (67-160)||(39223284-39223377)
chr2 (155-224)||(39380970-39381039)
chr2 (10-134)||(39191951-39192074)
chr2 (79-217)||(39468843-39468976)
chr2 (1-138)||(39197628-39197764)
chr2 (67-110)||(39414266-39414309)
chr2 (67-218)||(39478517-39478670)
[»] chr6 (1 HSPs)
chr6 (170-224)||(16113989-16114043)
[»] chr1 (1 HSPs)
chr1 (92-198)||(51171541-51171647)


Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 39216073 - 39216296
Alignment:
Q  1 atattgatttagttttaatttttcaagtatatttaaaatagtgtaggttcaacatccctcgacaaaattgaggggcacttaatagtccaattagtgcaac 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39216073 atattgatttagttttaatttttcaagtatatttcaaatagtgtaggttcaacatccctcgacaaaattgaggggcacttaatagtccaattagtgcaac 39216172  T
Q  101 tatttctagtcttgtttattaatcgatgaaatctaacattgtctccggtgattcagttaaggtgttgtgttgacattgattgtaactgttagtataatgc 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39216173 tatttctagtcttgtttatcaatcgatgaaatctaacattgtctccggtgattcagttaaggtgttgtgttgacattgattgtaactgttagtataatgc 39216272  T
Q  201 tttcttctgtcacccatatatttc 224  Q
    ||||||||||||||||||||||||    
T  39216273 tttcttctgtcacccatatatttc 39216296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 39162283 - 39162486
Alignment:
Q  1 atattgatttagttttaatttttcaagtatatttaaaatagtgtaggttcaacatccctcgacaaa-attgaggggcacttaatagtccaattagtgcaa 99  Q
    ||||| || ||||||||||||||||| ||||||| ||| | |||| |||||| || |   |||||| |||| |||| |||||||||||| ||||||||||    
T  39162283 atattaatgtagttttaatttttcaattatatttcaaaaactgtatgttcaatattct--gacaaacattgcggggtacttaatagtcctattagtgcaa 39162380  T
Q  100 ctatttctagtcttgtttattaatcgatgaaatctaacattgtctccggtgattcagttaaggtgttgtgttgacattgattgtaactgttagtataatg 199  Q
    |||||  |||||||||||||||||| ||||||||||||| | ||| |  ||||||||||| |||| | |||||||||||||||||||||||||||| |||    
T  39162381 ctattaatagtcttgtttattaatcaatgaaatctaacactttctaccttgattcagttacggtgctatgttgacattgattgtaactgttagtattatg 39162480  T
Q  200 ctttct 205  Q
    ||||||    
T  39162481 ctttct 39162486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 39206911 - 39206708
Alignment:
Q  1 atattgatttagttttaatttttcaagtatatttaaaatagtgtaggttcaacatccctcgacaaa-attgaggggcacttaatagtccaattagtgcaa 99  Q
    ||||| || ||||||||||||||||| ||||||| ||| | |||| |||||| || |   |||||| |||| |||| |||||||||||| ||||||||||    
T  39206911 atattaatgtagttttaatttttcaattatatttcaaaaactgtatgttcaatattct--gacaaacattgcggggtacttaatagtcctattagtgcaa 39206814  T
Q  100 ctatttctagtcttgtttattaatcgatgaaatctaacattgtctccggtgattcagttaaggtgttgtgttgacattgattgtaactgttagtataatg 199  Q
    |||||  |||||||||||||||||| ||||||||||||| | ||| |  ||||||||||| |||| | |||||||||||||||||||||||||||| |||    
T  39206813 ctattaatagtcttgtttattaatcaatgaaatctaacactttctaccttgattcagttacggtgctatgttgacattgattgtaactgttagtattatg 39206714  T
Q  200 ctttct 205  Q
    ||||||    
T  39206713 ctttct 39206708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 67 - 205
Target Start/End: Original strand, 39370603 - 39370742
Alignment:
Q  67 attgaggggcacttaatagtccaattagtgcaactatttctagtcttgttt-attaatcgatgaaatctaacattgtctccggtgattcagttaaggtgt 165  Q
    |||||||||||||||||| ||| ||||||||||||| |||||||||||||  ||||||  |||||||||| || | ||||| ||||||||||| |||||     
T  39370603 attgaggggcacttaataatcctattagtgcaactacttctagtcttgttggattaatgaatgaaatctatcactctctcctgtgattcagttcaggtgc 39370702  T
Q  166 tgtgttgacattgattgtaactgttagtataatgctttct 205  Q
    |  ||||||||||||||||||||||| |||||||||||||    
T  39370703 tacgttgacattgattgtaactgttattataatgctttct 39370742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 39388727 - 39388520
Alignment:
Q  13 ttttaatttttcaagtatatttaaaatagtgtaggttcaacatccctcgacaaaattgaggggcacttaatagtccaattagtgcaactatttctagtct 112  Q
    |||||||||||||||||||||  ||| ||||||||||||| || |   ||||| |||||||||||||||||||||| || ||||| ||||||||||||||    
T  39388727 ttttaatttttcaagtatattgcaaaaagtgtaggttcaatattct--gacaacattgaggggcacttaatagtcctatcagtgctactatttctagtct 39388630  T
Q  113 tgtttattaatcgatgaaatctaacattgtctc-cggtgattcagttaaggtgttgtgttgacattgattgtaactgttagtataatgctttcttctgtc 211  Q
    || ||||||||| ||||| |||||||   |  | | ||  | ||||||||||  | |||||| |||||||||||||||||||||||||||||| ||| ||    
T  39388629 tgcttattaatcaatgaactctaacagactaacactgt-ctccagttaaggt-ctatgttgaaattgattgtaactgttagtataatgctttc-tctctc 39388533  T
Q  212 acccatatatttc 224  Q
    | |||||||||||    
T  39388532 atccatatatttc 39388520  T

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Target: chr2; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 67 - 160
Target Start/End: Original strand, 39223284 - 39223377
Alignment:
Q  67 attgaggggcacttaatagtccaattagtgcaactatttctagtcttgtttattaatcgatgaaatctaacattgtctccggtgattcagttaa 160  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||   |||||| ||||||||||||    
T  39223284 attgagaggcacttaatagtccaattagtgcaactatttttagtcttgtttattaatcaataaaatctaacaccttctccgttgattcagttaa 39223377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 155 - 224
Target Start/End: Complemental strand, 39381039 - 39380970
Alignment:
Q  155 agttaaggtgttgtgttgacattgattgtaactgttagtataatgctttcttctgtcacccatatatttc 224  Q
    |||||||||||| ||||| |||||||||||||||||| ||||||||||||||  ||||||||||||||||    
T  39381039 agttaaggtgttctgttggcattgattgtaactgttactataatgctttctttcgtcacccatatatttc 39380970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 134
Target Start/End: Complemental strand, 39192074 - 39191951
Alignment:
Q  10 tagttttaatttttcaagtatatttaaaatagtgtaggttcaacatccctcgacaaa-attgaggggcacttaatagtccaattagtgcaactatttcta 108  Q
    ||||||||||||||||||||||||  ||| || |||||||||| || |   || | | ||| |||||||||||||||||| ||||||||||||||||||     
T  39192074 tagttttaatttttcaagtatattgcaaaaagggtaggttcaatattct--gatagacattaaggggcacttaatagtcctattagtgcaactatttctc 39191977  T
Q  109 gtcttgtttattaatcgatgaaatct 134  Q
    ||||| |||||||||| || ||||||    
T  39191976 gtcttatttattaatcaattaaatct 39191951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 217
Target Start/End: Original strand, 39468843 - 39468976
Alignment:
Q  79 ttaatagtccaattagtgcaactatttctagtcttgtttattaatcgatgaaatctaacattgtctccggtgattcagttaaggtgttgtgttgacattg 178  Q
    |||||| ||| |||||||||||| ||||||||||||||||| || |     |||| |||| | |||||  | |||||||||||||| | | |||||||||    
T  39468843 ttaataatcctattagtgcaactgtttctagtcttgtttatgaacc-----aatccaacactatctccattcattcagttaaggtgctatattgacattg 39468937  T
Q  179 attgtaactgttagtataatgctttcttctgtcacccat 217  Q
    ||||||||| |||||| ||| ||||  ||||||||||||    
T  39468938 attgtaactattagtacaattcttttctctgtcacccat 39468976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 39197764 - 39197628
Alignment:
Q  1 atattgatttagttttaatttttcaagtatatttaaaatagtgtaggttcaacatccctcgaca-aaattgaggggcacttaatagt-ccaattagtgca 98  Q
    ||||| || ||||||||||||||||||||||||  ||| ||||||||||||| || |   |||| | ||| |||||||| ||||||| || |||||||||    
T  39197764 atattaatgtagttttaatttttcaagtatattgcaaaaagtgtaggttcaatattc--tgacagacattaaggggcac-taatagtccctattagtgca 39197668  T
Q  99 actatttctagtcttgtttattaatcgatgaaatctaaca 138  Q
    ||||||||||||||| || | ||||| || | ||||||||    
T  39197667 actatttctagtcttattcaataatcaattagatctaaca 39197628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 110
Target Start/End: Complemental strand, 39414309 - 39414266
Alignment:
Q  67 attgaggggcacttaatagtccaattagtgcaactatttctagt 110  Q
    |||||||||||||||||||||| || ||||||||||||| ||||    
T  39414309 attgaggggcacttaatagtcctatcagtgcaactatttatagt 39414266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 218
Target Start/End: Complemental strand, 39478670 - 39478517
Alignment:
Q  67 attgaggggcacttaatagtccaattagtgcaactatttctagtcttgtttattaatcgatga--aatctaacattgtctccggtgattcagttaaggtg 164  Q
    |||||||||||||| ||||||| ||  |||||| ||||||  ||||||||||| ||     ||  ||||||||| |||||||  | |||||||| ||| |    
T  39478670 attgaggggcacttgatagtcctatctgtgcaattatttcgggtcttgtttatgaagtacggaccaatctaacactgtctccatttattcagtttaggcg 39478571  T
Q  165 ttgtgttgacattgattgtaactgttagtataatgctttcttctgtcacccata 218  Q
     | | | |||||||||||||||| ||||||||||  |||| | |||||||||||    
T  39478570 ctatatcgacattgattgtaactattagtataattatttcctatgtcacccata 39478517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 16113989 - 16114043
Alignment:
Q  170 ttgacattgattgtaactgttagtataatgctttcttctgtcacccatatatttc 224  Q
    ||||||||||||||||||||||||||||| ||||| | ||||| ||||| |||||    
T  16113989 ttgacattgattgtaactgttagtataattctttcctatgtcagccataaatttc 16114043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 198
Target Start/End: Complemental strand, 51171647 - 51171541
Alignment:
Q  92 tagtgcaactatttctagtcttgtttattaatcgatgaaatctaacattgtctccggtgattcagttaaggtgttgtgttgacattgattgtaactgtta 191  Q
    |||| ||||||||| ||||||||||| | || | ||||| |||| |  || || |||||||  ||||||| |||| | ||||||||||||| |||| |||    
T  51171647 tagttcaactatttgtagtcttgtttgtcaaccaatgaagtctagccatgccttcggtgatctagttaagatgttatattgacattgattgcaactatta 51171548  T
Q  192 gtataat 198  Q
    |||||||    
T  51171547 gtataat 51171541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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