View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10842_low_13 (Length: 240)

Name: NF10842_low_13
Description: NF10842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10842_low_13
NF10842_low_13
[»] chr5 (4 HSPs)
chr5 (18-240)||(17882684-17882906)
chr5 (34-226)||(15017394-15017586)
chr5 (18-240)||(15050147-15050369)
chr5 (18-240)||(14775311-14775533)
[»] chr1 (1 HSPs)
chr1 (18-240)||(36874208-36874430)


Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 17882684 - 17882906
Alignment:
Q  18 atatccaaacctcctgagcacagtccatgttgtctcaagaggccctttttctatgaaaaggacatgaagaaatagaaaccctgtcaaagtaagtcctcgt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  17882684 atatccaaacctcctgagcacagtccatgttgtctcaagaggccctttttctatgaaaaggacatgaagaaatagaaaccctgtcaaagtaattcctcgt 17882783  T
Q  118 tcattcacaccttcagacaattctttttgcacaaccttctttacatttgcaatttcccatggttgcataggagcattgaaacatacaacctgtagatagt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  17882784 tcattcacaccttcagacaattctttttgcacaaccttctttacatttgcaatttcccatggttgcataggagcattgaaacatacagcctgtagatagt 17882883  T
Q  218 attgttagaagtttcacaaatct 240  Q
    |||||||||||||||||||||||    
T  17882884 attgttagaagtttcacaaatct 17882906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 34 - 226
Target Start/End: Original strand, 15017394 - 15017586
Alignment:
Q  34 agcacagtccatgttgtctcaagaggccctttttctatgaaaaggacatgaagaaatagaaaccctgtcaaagtaagtcctcgttcattcacaccttcag 133  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||  |||||||||||||||||||||| ||||| |    
T  15017394 agcacagtccatgttgcctcaagaggccctttttctatgaaaagggcatgaagaaatagaaatcctgttgaagtaagtcctcgttcattcacgccttctg 15017493  T
Q  134 ac-aattctttttgcacaaccttctttacatttgcaatttcccatggttgcataggagcattgaaacatacaacctgtagatagtattgttaga 226  Q
    || |||||||||| |||||||| ||||||||    ||||||   ||| | || ||||||||||||||||  |||||||||||||| | ||||||    
T  15017494 acaaattcttttt-cacaacctcctttacatccaaaatttcatgtggcttcagaggagcattgaaacatctaacctgtagatagtttagttaga 15017586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 15050147 - 15050369
Alignment:
Q  18 atatccaaacctcctgagcacagtccatgttgtctcaagaggccctttttctatgaaaaggacatgaagaaatagaaaccctgtcaaagtaagtcctcgt 117  Q
    |||||||||| ||||||| || |||||||||| |||| ||||||| ||||| |||||||||  ||||||| ||||||| | |||||| |||||| |||||    
T  15050147 atatccaaacttcctgagtacggtccatgttgcctcaggaggccccttttccatgaaaagggtatgaagatatagaaatcatgtcaaggtaagttctcgt 15050246  T
Q  118 tcattcacaccttcagacaattctttttgcacaaccttctttacatttgcaatttcccatggttgcataggagcattgaaacatacaacctgtagatagt 217  Q
    |||||||||||||||||||| | | |||||||||||||||||||||  | |||||| ||| ||| || || ||  |||||||||  ||||||| ||||||    
T  15050247 tcattcacaccttcagacaaatttgtttgcacaaccttctttacatccgaaatttcacattgttccaaagaagagttgaaacatttaacctgtggatagt 15050346  T
Q  218 attgttagaagtttcacaaatct 240  Q
     | ||||||  ||||||||||||    
T  15050347 ttagttagatttttcacaaatct 15050369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 14775311 - 14775533
Alignment:
Q  18 atatccaaacctcctgagcacagtccatgttgtctcaagaggccctttttctatgaaaaggacatgaagaaatagaaaccctgtcaaagtaagtcctcgt 117  Q
    |||||||||| |||||||||| ||||||||| ||||| | |||  |||||||| ||| ||| | |||||| ||| ||| |||| ||||| |||||| ||     
T  14775311 atatccaaacttcctgagcacggtccatgttttctcacggggcattttttctaagaagagggcgtgaagagatataaatcctgccaaagaaagtccccgc 14775410  T
Q  118 tcattcacaccttcagacaattctttttgcacaaccttctttacatttgcaatttcccatggttgcataggagcattgaaacatacaacctgtagatagt 217  Q
    |||||||||||||||| ||||| |||| |||||||||||||||||     ||||||  ||||||| | ||||||||| ||||||  |||||||||| |||    
T  14775411 tcattcacaccttcaggcaatttttttcgcacaaccttctttacaaccaaaatttcggatggttgaaaaggagcattaaaacatttaacctgtagagagt 14775510  T
Q  218 attgttagaagtttcacaaatct 240  Q
     | ||||||  ||||||||||||    
T  14775511 ttagttagatttttcacaaatct 14775533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 36874430 - 36874208
Alignment:
Q  18 atatccaaacctcctgagcacagtccatgttgtctcaagaggccctttttctatgaaaaggacatgaagaaatagaaaccctgtcaaagtaagtcctcgt 117  Q
    |||||| ||| | ||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||    
T  36874430 atatccgaactttctgagcacagtccatgtagtctcaagacgccctttttctatgaaaagggcatgaagaaatagaaatcccgtcaaagtaagtcctcgt 36874331  T
Q  118 tcattcacaccttcagacaattctttttgcacaaccttctttacatttgcaatttcccatggttgcataggagcattgaaacatacaacctgtagatagt 217  Q
    || || ||||||||||||||||  | |||||||||||||||||||    |||||||   |||||||| |||||| |||||||||  |||||||| |||||    
T  36874330 tcgttaacaccttcagacaatttatcttgcacaaccttctttacacccacaatttctgctggttgcagaggagcgttgaaacatctaacctgtatatagt 36874231  T
Q  218 attgttagaagtttcacaaatct 240  Q
     | ||||||  ||||||||||||    
T  36874230 ttggttagatttttcacaaatct 36874208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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