View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10842_low_3 (Length: 333)
Name: NF10842_low_3
Description: NF10842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10842_low_3 |
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| [»] scaffold0408 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 326
Target Start/End: Complemental strand, 2357977 - 2357677
Alignment:
| Q |
19 |
cgaacatcaacatctttatgagtgttaagaaatctttcaggtttaaactctaatggatccgaccaaacattatggtctgtttggatcttccaaagattta |
118 |
Q |
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||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2357977 |
cgaacatcaacatctttataagtgttaagaaatctttctggtttaaactttaatggatccgaccaaacattatggtctgtttggattttccaaagattta |
2357878 |
T |
|
| Q |
119 |
agattagtcgagttccttttatgacatcataaccacctatgttgcaatttttggtaaactcacgaggtgcagagagaggaccagctggatataatcttag |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2357877 |
agattagtcgagttccttttatgacatcataaccacctatgttacaattttcggtaaactcacgaggtgcagagagaggaccaactggatataatc---- |
2357782 |
T |
|
| Q |
219 |
ccattagggtttctttgattatcacttgaaggtacaccaacttatttatatccgactttgttacacatttatctcttccaacgtggaagtcaagttctgc |
318 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2357781 |
---ttagggtttctttgattatcgcttgaaggtacaccaacttgtttatatccgactttgttacacatttatctcttccaacgtggaagtcaagttctgc |
2357685 |
T |
|
| Q |
319 |
ctttgctt |
326 |
Q |
| |
|
||||||| |
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|
| T |
2357684 |
ttttgctt |
2357677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 21 - 218
Target Start/End: Complemental strand, 2340206 - 2340009
Alignment:
| Q |
21 |
aacatcaacatctttatgagtgttaagaaatctttcaggtttaaactctaatggatccgaccaaacattatggtctgtttggatcttccaaagatttaag |
120 |
Q |
| |
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|||||||||| ||||||||||| ||| ||| ||||| ||||| |||||||||||||| | ||||||| || | |||||||| ||||||||||||||| | |
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| T |
2340206 |
aacatcaacagctttatgagtggtaaaaaacctttctggtttgaactctaatggatctggccaaacactaggatctgtttgaatcttccaaagatttgtg |
2340107 |
T |
|
| Q |
121 |
attagtcgagttccttttatgacatcataaccacctatgttgcaatttttggtaaactcacgaggtgcagagagaggaccagctggatataatcttag |
218 |
Q |
| |
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|||| ||||||||| ||||| || | ||||||||||| || ||||| || | || ||||| ||| | ||||||||||| | |||||| |||||||| |
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| T |
2340106 |
attaatcgagttccctttataacttgataaccacctaaattacaattctttgagaattcacgtggtccggagagaggacccggtggatacaatcttag |
2340009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 21 - 218
Target Start/End: Complemental strand, 2351659 - 2351462
Alignment:
| Q |
21 |
aacatcaacatctttatgagtgttaagaaatctttcaggtttaaactctaatggatccgaccaaacattatggtctgtttggatcttccaaagatttaag |
120 |
Q |
| |
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|||||||||| ||||||||||| ||||||| ||||| ||||| |||||||||||||| ||||||||| || | || ||||| |||||||||||||||| |
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| T |
2351659 |
aacatcaacaactttatgagtggtaagaaacctttctggtttgaactctaatggatctgaccaaacactaggatcagtttgaatcttccaaagatttagc |
2351560 |
T |
|
| Q |
121 |
attagtcgagttccttttatgacatcataaccacctatgttgcaatttttggtaaactcacgaggtgcagagagaggaccagctggatataatcttag |
218 |
Q |
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|||| |||||||||||| | |||| |||||||| || ||||||| | | || ||||||||||| | ||||||||| | ||||| |||||||| |
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| T |
2351559 |
attaaccgagttccttttctaacatggtaaccaccaatagtgcaattctctgagaattcacgaggtgcggcgagaggacctggtggatgcaatcttag |
2351462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 21 - 157
Target Start/End: Complemental strand, 2307525 - 2307389
Alignment:
| Q |
21 |
aacatcaacatctttatgagtgttaagaaatctttcaggtttaaactctaatggatccgaccaaacattatggtctgtttggatcttccaaagatttaag |
120 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||| | ||||| |||| | || || | ||| ||||||||||| | |
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| T |
2307525 |
aacatcaacatctttatgagtggtaagaaatctttctggtttgaactctaatggatctggccaaatattaggatccgtgttaatcctccaaagatttgtg |
2307426 |
T |
|
| Q |
121 |
attagtcgagttccttttatgacatcataaccaccta |
157 |
Q |
| |
|
|||| ||||||||| ||||| |||| |||||| |||| |
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| T |
2307425 |
attaatcgagttccctttataacatgataacctccta |
2307389 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 14711376 - 14711465
Alignment:
| Q |
21 |
aacatcaacatctttatgagtgttaagaaatctttcaggtttaaactctaatggatccgaccaaacattatggtctgtttggatcttcca |
110 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||| ||||| |||||||||| ||||||| || | || |||||||||||||| |
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| T |
14711376 |
aacatcaacatctttatgagttgtaagaaatctctcaggtttgaactccaatggatccggccaaacactaggatcagtttggatcttcca |
14711465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 285
Target Start/End: Complemental strand, 2363287 - 2363033
Alignment:
| Q |
24 |
atcaacatctttatgagtgttaagaaatctttcaggtttaaactctaatggatccgaccaaacattatggtctgtttggatcttccaaagatttaagatt |
123 |
Q |
| |
|
||||| ||||||||| || ||||||| || || ||||| || |||||||||| |||||||||||| | || || || |||||||||||||| || ||| |
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| T |
2363287 |
atcaatatctttatgcgttgtaagaaacctctccggtttgaatactaatggatctgaccaaacattaggatcagtgtgaatcttccaaagattcaaaatt |
2363188 |
T |
|
| Q |
124 |
agtcgagttccttttatgacatcataaccacctatgttgcaatttttggtaaactcacgaggtgcagagagaggaccagctggatataatcttagccatt |
223 |
Q |
| |
|
| ||| ||||| ||| | |||||||| ||||||| || ||||| | | || |||||||| |||| | ||| |||| ||||||||||| || |
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| T |
2363187 |
aatcgtgttccatttcttacatcatatccacctaaattacaattctctgagaattcacgaggcacagataaagggccaggtggatataatc-------tt |
2363095 |
T |
|
| Q |
224 |
agggtttctttgattatcacttgaaggtacaccaacttatttatatccgactttgttacaca |
285 |
Q |
| |
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|| |||||||||| ||| ||||||||||||||||||| | |||||| |||||| ||||||| |
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| T |
2363094 |
agtgtttctttgactatggcttgaaggtacaccaacttgtctatatctgactttcttacaca |
2363033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 23 - 267
Target Start/End: Original strand, 2261319 - 2261556
Alignment:
| Q |
23 |
catcaacatctttatgagtgttaagaaatctttcaggtttaaactctaatggatccgaccaaacattatggtctgtttggatcttccaaagatttaagat |
122 |
Q |
| |
|
||||||||| ||| |||||| ||||||||||||| ||||| |||||||||||||| | ||||| | | | || ||||| || |||||||||||| ||| |
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|
| T |
2261319 |
catcaacatttttgtgagtggtaagaaatctttctggtttgaactctaatggatctggccaaatacttggatcggtttgaattttccaaagatttgtgat |
2261418 |
T |
|
| Q |
123 |
tagtcgagttccttttatgacatcataaccacctatgttgcaatttttggtaaactcacgaggtgcagagagaggaccagctggatataatcttagccat |
222 |
Q |
| |
|
|||| |||||||||| ||| | ||| ||||||| | |||| || || || ||||||||||| ||||||||||| | ||||| |||| | |
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|
| T |
2261419 |
aagtctagttccttttttgatacgatagccacctaacgtacaatcttctgtgaattcacgaggtgctgagagaggacctggaggatacaatc-------t |
2261511 |
T |
|
| Q |
223 |
tagggtttctttgattatcacttgaaggtacaccaacttatttat |
267 |
Q |
| |
|
|||||||||||||| ||| ||||||| || |||||||||||||| |
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| T |
2261512 |
tagggtttctttgactattgcttgaagatataccaacttatttat |
2261556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 14753447 - 14753536
Alignment:
| Q |
21 |
aacatcaacatctttatgagtgttaagaaatctttcaggtttaaactctaatggatccgaccaaacattatggtctgtttggatcttcca |
110 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||| || ||||| |||||||||| |||||| || |||| |||||||||||||| |
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|
| T |
14753447 |
aacatcaacatctttatgagttgtaagaaatctcccaggcttgaactccaatggatccggccaaacgctagggtcagtttggatcttcca |
14753536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 2297423 - 2297361
Alignment:
| Q |
24 |
atcaacatctttatgagtgttaagaaatctttcaggtttaaactctaatggatccgaccaaac |
86 |
Q |
| |
|
|||||||||||| | |||| ||||||| |||||||||||||| ||||||||||| |||||||| |
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|
| T |
2297423 |
atcaacatctttgttagtggtaagaaacctttcaggtttaaattctaatggatctgaccaaac |
2297361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 21 - 157
Target Start/End: Original strand, 5804278 - 5804414
Alignment:
| Q |
21 |
aacatcaacatctttatgagtgttaagaaatctttcaggtttaaactctaatggatccgaccaaacattatggtctgtttggatcttccaaagatttaag |
120 |
Q |
| |
|
|||||||| |||||||||||| ||||||| ||||| || ||||| |||||||||| | ||||||| || | |||||||||||||||||||||||| | |
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|
| T |
5804278 |
aacatcaatatctttatgagttgtaagaaacctttctggcttaaaatctaatggatttggccaaacactaagatctgtttggatcttccaaagatttgtg |
5804377 |
T |
|
| Q |
121 |
attagtcgagttccttttatgacatcataaccaccta |
157 |
Q |
| |
|
|||| ||||||||||||| | |||| ||||||||||| |
|
|
| T |
5804378 |
attaatcgagttccttttgtaacatgataaccaccta |
5804414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 316
Target Start/End: Complemental strand, 4305988 - 4305700
Alignment:
| Q |
21 |
aacatcaacatctttatgagtgttaagaaatctttcaggtttaaactctaatggatccgaccaaacattatggtctgtttggatcttccaaagatttaag |
120 |
Q |
| |
|
|||||||||| |||||||||| ||||||| | ||| ||||| |||||||| || || ||||||| ||| | || || ||||||||||| ||||| | | |
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|
| T |
4305988 |
aacatcaacacctttatgagtagtaagaaaccgttctggtttgaactctaaaggttctaaccaaaccttaggatcagtatggatcttccatagattcatg |
4305889 |
T |
|
| Q |
121 |
attagtcgagttccttttatgacatcataaccacctatgttgcaatttttggtaaactcacgaggtgcagagagaggaccagctggatataatcttagcc |
220 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||| || | || | || |||||||| ||| | |||||||| | | |||| |||| | |
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|
| T |
4305888 |
attagtctagttccttttttgacatcataaccacctaaatttgagttctctgtgaactcacgtggtcctgagagaggggcgggtggacataa-------c |
4305796 |
T |
|
| Q |
221 |
attagggtttctttgattatcacttgaaggtacaccaacttatttatatccgactttgttacacatttatctcttccaacgtggaagtcaagttct |
316 |
Q |
| |
|
||||||||||||||| |||| |||||||||| |||||||| | ||||||||||| | ||||||| | ||| | ||||| |||| |||||||||| |
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|
| T |
4305795 |
cttagggtttctttgactatcgcttgaaggtataccaacttgtctatatccgactcttttacacacctctctttgccaacttggatgtcaagttct |
4305700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0408 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0408
Description:
Target: scaffold0408; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 616 - 528
Alignment:
| Q |
21 |
aacatcaacatctttatgagtgttaagaaatctttcaggtttaaactctaatggatccgaccaaacattatggtctgtttggatcttcca |
110 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||| || ||||| |||||||||| || ||| || |||| |||||||||||||| |
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|
| T |
616 |
aacatcaacatctttatgagttgtaagaaatctcccaggcttgaactccaatggatccggcc-aacgctagggtcagtttggatcttcca |
528 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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