View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10842_low_4 (Length: 324)

Name: NF10842_low_4
Description: NF10842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10842_low_4
NF10842_low_4
[»] scaffold0341 (2 HSPs)
scaffold0341 (8-308)||(12153-12453)
scaffold0341 (11-308)||(4528-4829)
[»] chr1 (14 HSPs)
chr1 (8-308)||(6510473-6510773)
chr1 (11-308)||(6502849-6503150)
chr1 (142-308)||(6514872-6515039)
chr1 (10-105)||(6515066-6515161)
chr1 (11-105)||(6497722-6497816)
chr1 (8-105)||(6525341-6525438)
chr1 (207-297)||(6497501-6497591)
chr1 (217-297)||(47775329-47775409)
chr1 (212-294)||(6525528-6525610)
chr1 (220-297)||(47771234-47771311)
chr1 (217-288)||(47743700-47743771)
chr1 (217-288)||(47758101-47758172)
chr1 (214-287)||(47700942-47701015)
chr1 (215-287)||(47711224-47711296)
[»] chr5 (6 HSPs)
chr5 (214-288)||(28859789-28859863)
chr5 (214-288)||(28854402-28854476)
chr5 (214-288)||(28828701-28828775)
chr5 (217-287)||(27368344-27368414)
chr5 (214-258)||(28874400-28874444)
chr5 (11-105)||(28828947-28829041)
[»] chr8 (1 HSPs)
chr8 (217-288)||(11225257-11225328)


Alignment Details
Target: scaffold0341 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 8 - 308
Target Start/End: Complemental strand, 12453 - 12153
Alignment:
Q  8 gagatgaatcctaagatagctgattttggcatggcaaggctttttggtgttgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaagtgt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  12453 gagatgaatcctaagatagctgattttggcatggcaaggctttttagtattgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaagtat 12354  T
Q  108 tnnnnnnntagtattggttgtttttaaattagtttatgcaagttagtagaaagttgaagataagtgaaaatattttgcttaatttagcttaactcccata 207  Q
    |       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12353 taaaaaaatagtattggttgtttttaaattagtttatgcaagttagtagaaagttgaagataagtgaaaatattttgcttaatttagcttaactcccata 12254  T
Q  208 ttgttttgtagtggatatatggcacctgagtatgtaatgcacggacagttttcagtaaaatccgatgtctttagttttggtatattggttttagaaattg 307  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12253 ttgttttgtagtggatatatggcacctgagtatgtaatgcaaggacagttttcagtaaaatccgatgtctttagttttggtatattggttttagaaattg 12154  T
Q  308 t 308  Q
    |    
T  12153 t 12153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 11 - 308
Target Start/End: Complemental strand, 4829 - 4528
Alignment:
Q  11 atgaatcctaagatagctgattttggcatggcaaggctttttggtgttgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaagtgttnn 110  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||      
T  4829 atgaatcctaagatagctgattttggcatggcaagactttttggtgttgaccaaacccagg-aaacacaaatagaattgtgggaacttagtaagcattca 4731  T
Q  111 nnnnntagtattggttgtttttaa--------------attagtttatgcaagttagtagaaagttgaagataagtgaaaatattttgcttaatttagct 196  Q
          |||||||||||||||| |               |||||||||| || | | ||||||||||||||||| |||||| ||||||||||            
T  4730 aaaaaaagtattggttgttttttattttaatcaggaggcttagtttatgtaaataaatagaaagttgaagataattgaaaacattttgctta-------- 4639  T
Q  197 taactcccatattgttttgtagtggatatatggcacctgagtatgtaatgcacggacagttttcagtaaaatccgatgtctttagttttggtatattggt 296  Q
     | |  ||  |||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||||||    
T  4638 -accatcctcattgttttgtagcggatatatggcacctgagtatgtaatgcacggacaattttcggtaaaatcagatgtcttcagttttggtatattggt 4540  T
Q  297 tttagaaattgt 308  Q
    | | ||||||||    
T  4539 tcttgaaattgt 4528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 8 - 308
Target Start/End: Complemental strand, 6510773 - 6510473
Alignment:
Q  8 gagatgaatcctaagatagctgattttggcatggcaaggctttttggtgttgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaagtgt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  6510773 gagatgaatcctaagatagctgattttggcatggcaaggctttttagtattgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaagtat 6510674  T
Q  108 tnnnnnnntagtattggttgtttttaaattagtttatgcaagttagtagaaagttgaagataagtgaaaatattttgcttaatttagcttaactcccata 207  Q
    |       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6510673 taaaaaaatagtattggttgtttttaaattagtttatgcaagttagtagaaagttgaagataagtgaaaatattttgcttaatttagcttaactcccata 6510574  T
Q  208 ttgttttgtagtggatatatggcacctgagtatgtaatgcacggacagttttcagtaaaatccgatgtctttagttttggtatattggttttagaaattg 307  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6510573 ttgttttgtagtggatatatggcacctgagtatgtaatgcaaggacagttttcagtaaaatccgatgtctttagttttggtatattggttttagaaattg 6510474  T
Q  308 t 308  Q
    |    
T  6510473 t 6510473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 11 - 308
Target Start/End: Complemental strand, 6503150 - 6502849
Alignment:
Q  11 atgaatcctaagatagctgattttggcatggcaaggctttttggtgttgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaagtgttnn 110  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||      
T  6503150 atgaatcctaagatagctgattttggcatggcaagactttttggtgttgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaagcattca 6503051  T
Q  111 nnnnntagtattggttgtttttaaatt--------------agtttatgcaagttagtagaaagttgaagataagtgaaaatattttgcttaatttagct 196  Q
          |||||||||||||||| | ||              |||||||| || | | ||||||||||||||||| |||||| ||||||||||            
T  6503050 aaaaa-agtattggttgttttttattttaatcaggaggcttagtttatgtaaataaatagaaagttgaagataattgaaaacattttgctta-------- 6502960  T
Q  197 taactcccatattgttttgtagtggatatatggcacctgagtatgtaatgcacggacagttttcagtaaaatccgatgtctttagttttggtatattggt 296  Q
     | |  ||  |||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||||||    
T  6502959 -accatcctcattgttttgtagcggatatatggcacctgagtatgtaatgcacggacaattttcggtaaaatcagatgtcttcagttttggtatattggt 6502861  T
Q  297 tttagaaattgt 308  Q
    | | ||||||||    
T  6502860 tcttgaaattgt 6502849  T

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Target: chr1; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 142 - 308
Target Start/End: Complemental strand, 6515039 - 6514872
Alignment:
Q  142 tatgcaagttagtagaaagttgaagataagtgaaaatattttgcttaatttagcttaactc-ccatattgttttgtagtggatatatggcacctgagtat 240  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||  |||||||||| |||||||| ||||||||||| ||||||    
T  6515039 tatgcaagttagtagaaagttgaagataagtaaaaatatttttcttaatttagctgaactatccatattgttatgtagtgggtatatggcaccagagtat 6514940  T
Q  241 gtaatgcacggacagttttcagtaaaatccgatgtctttagttttggtatattggttttagaaattgt 308  Q
    |  | ||| ||||| ||||||  |||||| ||||||||||||||||||||||| ||| | ||||||||    
T  6514939 gcgaggcatggacaattttcaacaaaatcagatgtctttagttttggtatattagttcttgaaattgt 6514872  T

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Target: chr1; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 10 - 105
Target Start/End: Complemental strand, 6515161 - 6515066
Alignment:
Q  10 gatgaatcctaagatagctgattttggcatggcaaggctttttggtgttgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaagt 105  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  6515161 gatgaatcctaagatagctgattttggcatggcaagactttttggtgtggaccaaacccaggaaaacacaaatagaattgtgggaacctagtaagt 6515066  T

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Target: chr1; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 11 - 105
Target Start/End: Complemental strand, 6497816 - 6497722
Alignment:
Q  11 atgaatcctaagatagctgattttggcatggcaaggctttttggtgttgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaagt 105  Q
    ||||||||||||||| ||||||||||||||||||| || |||||||| |||||||| |||||||||||||| |||||||||||||| ||||||||    
T  6497816 atgaatcctaagatatctgattttggcatggcaagactatttggtgtggaccaaacacaggaaaacacaaaaagaattgtgggaacctagtaagt 6497722  T

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Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 6525341 - 6525438
Alignment:
Q  8 gagatgaatcctaagatagctgattttggcatggcaaggctttttggtgttgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaagt 105  Q
    |||||||||||||||||||| |||||||||||||| || || |||| ||| |||||||| |||||||| ||||| |||||||||||||| ||||||||    
T  6525341 gagatgaatcctaagatagcagattttggcatggctagactgtttgatgtggaccaaactcaggaaaatacaaacagaattgtgggaacctagtaagt 6525438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 207 - 297
Target Start/End: Complemental strand, 6497591 - 6497501
Alignment:
Q  207 attgttttgtagtggatatatggcacctgagtatgtaatgcacggacagttttcagtaaaatccgatgtctttagttttggtatattggtt 297  Q
    |||||||||||||||||||||||||||||| ||||  ||||||||||| |||||||| || || ||||| || ||||| ||||||||||||    
T  6497591 attgttttgtagtggatatatggcacctgaatatgctatgcacggacaattttcagtgaagtcggatgtattcagtttcggtatattggtt 6497501  T

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Target: chr1; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 217 - 297
Target Start/End: Original strand, 47775329 - 47775409
Alignment:
Q  217 agtggatatatggcacctgagtatgtaatgcacggacagttttcagtaaaatccgatgtctttagttttggtatattggtt 297  Q
    ||||||||||||||||||||||||| |||||| ||||| ||||| |||||||| |||||||||||||| ||  ||||||||    
T  47775329 agtggatatatggcacctgagtatgcaatgcatggacaattttcggtaaaatcggatgtctttagtttcggagtattggtt 47775409  T

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Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 294
Target Start/End: Original strand, 6525528 - 6525610
Alignment:
Q  212 tttgtagtggatatatggcacctgagtatgtaatgcacggacagttttcagtaaaatccgatgtctttagttttggtatattg 294  Q
    |||| ||||||||||||||||| ||||||| |||||| ||||| |||||||| || || ||||| |||||||||||| |||||    
T  6525528 tttgcagtggatatatggcaccggagtatgcaatgcatggacaattttcagtgaagtcagatgtatttagttttggtgtattg 6525610  T

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Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 220 - 297
Target Start/End: Original strand, 47771234 - 47771311
Alignment:
Q  220 ggatatatggcacctgagtatgtaatgcacggacagttttcagtaaaatccgatgtctttagttttggtatattggtt 297  Q
    ||||| |||||||||||||||| |||||| ||||| ||||| |||||||| ||||||||||| |||||  ||||||||    
T  47771234 ggatacatggcacctgagtatgcaatgcatggacaattttcggtaaaatcggatgtctttagctttggggtattggtt 47771311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 47743771 - 47743700
Alignment:
Q  217 agtggatatatggcacctgagtatgtaatgcacggacagttttcagtaaaatccgatgtctttagttttggt 288  Q
    |||||||||||||| |||||||||| ||||   ||| | ||||| |||||||| ||||| ||||||||||||    
T  47743771 agtggatatatggctcctgagtatgcaatgtttggagaattttcggtaaaatcagatgtttttagttttggt 47743700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 47758172 - 47758101
Alignment:
Q  217 agtggatatatggcacctgagtatgtaatgcacggacagttttcagtaaaatccgatgtctttagttttggt 288  Q
    |||||||||||||| |||||||||| ||||   ||| | ||||| |||||||| ||||| ||||||||||||    
T  47758172 agtggatatatggctcctgagtatgcaatgtttggagaattttcggtaaaatcagatgtttttagttttggt 47758101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 287
Target Start/End: Complemental strand, 47701015 - 47700942
Alignment:
Q  214 tgtagtggatatatggcacctgagtatgtaatgcacggacagttttcagtaaaatccgatgtctttagttttgg 287  Q
    |||||||||||||||||||  || |||| ||||   ||||| |||||||| ||||| ||||| |||||||||||    
T  47701015 tgtagtggatatatggcactcgaatatgcaatgtttggacaattttcagtcaaatcggatgtttttagttttgg 47700942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 287
Target Start/End: Complemental strand, 47711296 - 47711224
Alignment:
Q  215 gtagtggatatatggcacctgagtatgtaatgcacggacagttttcagtaaaatccgatgtctttagttttgg 287  Q
    |||||||||||||||| || |||||||||| |   ||| | ||||| |||||||| ||||| |||||||||||    
T  47711296 gtagtggatatatggctcccgagtatgtaaggtttggagaattttcggtaaaatcagatgtttttagttttgg 47711224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 214 - 288
Target Start/End: Complemental strand, 28859863 - 28859789
Alignment:
Q  214 tgtagtggatatatggcacctgagtatgtaatgcacggacagttttcagtaaaatccgatgtctttagttttggt 288  Q
    ||||| ||||||||||||||||||||||||||||| ||| | |||||||| ||||| ||||||||||||||||||    
T  28859863 tgtagcggatatatggcacctgagtatgtaatgcatggagaattttcagtgaaatcagatgtctttagttttggt 28859789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 214 - 288
Target Start/End: Complemental strand, 28854476 - 28854402
Alignment:
Q  214 tgtagtggatatatggcacctgagtatgtaatgcacggacagttttcagtaaaatccgatgtctttagttttggt 288  Q
    ||||| || |||||||||||||||||||||||||| ||| | |||||||||||||| |||||||| |||||||||    
T  28854476 tgtagcgggtatatggcacctgagtatgtaatgcatggagaattttcagtaaaatcagatgtcttcagttttggt 28854402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 214 - 288
Target Start/End: Complemental strand, 28828775 - 28828701
Alignment:
Q  214 tgtagtggatatatggcacctgagtatgtaatgcacggacagttttcagtaaaatccgatgtctttagttttggt 288  Q
    ||||||||||| ||||||||||||||||||||||| ||| | ||||| || ||||| ||||||||| ||||||||    
T  28828775 tgtagtggatacatggcacctgagtatgtaatgcatggagaattttcggtgaaatcagatgtctttggttttggt 28828701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 217 - 287
Target Start/End: Complemental strand, 27368414 - 27368344
Alignment:
Q  217 agtggatatatggcacctgagtatgtaatgcacggacagttttcagtaaaatccgatgtctttagttttgg 287  Q
    |||||||||||||||||||||||||  ||||| ||| | ||||| |||||||| ||||||| |||||||||    
T  27368414 agtggatatatggcacctgagtatgcgatgcatggagaattttcggtaaaatcagatgtctatagttttgg 27368344  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 28874444 - 28874400
Alignment:
Q  214 tgtagtggatatatggcacctgagtatgtaatgcacggacagttt 258  Q
    ||||| ||||||||||||||||||||||||||||| ||| |||||    
T  28874444 tgtagcggatatatggcacctgagtatgtaatgcatggagagttt 28874400  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 105
Target Start/End: Complemental strand, 28829041 - 28828947
Alignment:
Q  11 atgaatcctaagatagctgattttggcatggcaaggctttttggtgttgaccaaacccaggaaaacacaaatagaattgtgggaacttagtaagt 105  Q
    |||||| |||||||||| ||||||||||||||||| ||  ||  ||| || ||||| || | ||| |||| ||||||||| ||||| ||||||||    
T  28829041 atgaatgctaagatagcagattttggcatggcaagactaattcttgtggatcaaacacaagcaaatacaagtagaattgttggaacctagtaagt 28828947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 11225257 - 11225328
Alignment:
Q  217 agtggatatatggcacctgagtatgtaatgcacggacagttttcagtaaaatccgatgtctttagttttggt 288  Q
    |||||||||||||| |||||||||| ||||   ||| | ||||| |||||||| ||||| ||||||||||||    
T  11225257 agtggatatatggctcctgagtatgcaatgtttggagaattttcggtaaaatcagatgtttttagttttggt 11225328  T

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