View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10842_low_5 (Length: 322)

Name: NF10842_low_5
Description: NF10842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10842_low_5
NF10842_low_5
[»] chr2 (24 HSPs)
chr2 (1-308)||(39215487-39215795)
chr2 (100-275)||(39369996-39370172)
chr2 (7-281)||(39161724-39162002)
chr2 (7-281)||(39207192-39207470)
chr2 (120-239)||(39192439-39192558)
chr2 (120-239)||(39198119-39198238)
chr2 (7-264)||(39389020-39389281)
chr2 (120-281)||(39222767-39222929)
chr2 (121-308)||(39459107-39459295)
chr2 (121-308)||(39473409-39473597)
chr2 (124-298)||(39397852-39398027)
chr2 (100-239)||(39414761-39414900)
chr2 (124-239)||(39468264-39468379)
chr2 (151-239)||(39137807-39137895)
chr2 (9-75)||(39222932-39223001)
chr2 (120-235)||(39381510-39381625)
chr2 (121-236)||(39421832-39421947)
chr2 (187-308)||(39152439-39152561)
chr2 (1-46)||(39421688-39421733)
chr2 (140-238)||(39494461-39494559)
chr2 (9-46)||(39468448-39468485)
chr2 (11-42)||(39370254-39370285)
chr2 (1-46)||(39381367-39381412)
chr2 (9-53)||(39459387-39459431)
[»] chr6 (2 HSPs)
chr6 (124-281)||(16113181-16113339)
chr6 (9-46)||(16113441-16113478)
[»] chr7 (2 HSPs)
chr7 (151-239)||(19807757-19807845)
chr7 (1-45)||(19807963-19808007)
[»] chr5 (2 HSPs)
chr5 (7-46)||(33561135-33561174)
chr5 (1-41)||(17059602-17059642)


Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 39215795 - 39215487
Alignment:
Q  1 tgaaactctttcaataaactagatgaataagaacatttacccgattgtgtttcttcaatatattttttccttgacccaagcttcgtcggtcgtaaatcga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215795 tgaaactctttcaataaactagatgaataagaacatttacccgattgtgtttcttcaatatattttttccttgacccaagcttcgtcggtcgtaaatcga 39215696  T
Q  101 attttttcaactttaacttaggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215695 attttttcaactttaacttaggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaa 39215596  T
Q  201 ctcaagttctttccaccgtccttcaaattgcttctc-tttgattcaaagctctcaacttggctttcaaattgcttcttttttaaactgagctccttaacc 299  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39215595 ctcaagttctttccaccgtccttcaaattgcttctcttttgattcaaagctctcaacttgtctttcaaattgcttcttttttaaactgagctccttaacc 39215496  T
Q  300 cggcctttg 308  Q
    |||||||||    
T  39215495 cggcctttg 39215487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 100 - 275
Target Start/End: Complemental strand, 39370172 - 39369996
Alignment:
Q  100 aattttttcaactttaacttaggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctctttta 199  Q
    ||||| |||| |||| ||| | || |||||||||||| ||||||||||||||||||||| | ||||||||| ||||| ||| ||||||| ||||||||||    
T  39370172 aatttattcatctttgactcaagacccttgacttgtcttccaaactgcttctcttttaattcgaactccttcacctgcactatgaacttgttctctttta 39370073  T
Q  200 actcaagttctttccaccgtccttcaaattgcttctcttt-gattcaaagctctcaacttggctttcaaattgcttc 275  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||  |||  ||| |||||| ||||||||||||||    
T  39370072 actcaagttctttccaccgtccttcaaattgcttttctttcgatttgaagtgctcgacttgggtttcaaattgcttc 39369996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 7 - 281
Target Start/End: Complemental strand, 39162002 - 39161724
Alignment:
Q  7 tctttcaataaactagatgaataagaacatttacccgattgtgtttcttca---atatattttttccttgacccaagcttcgtcggtcgtaaatcgaatt 103  Q
    ||||||||||| ||||||||| ||||||||||||| |||| | |||| |||   |||||||||||||||||| || ||| | |  || ||  ||| ||||    
T  39162002 tctttcaataatctagatgaagaagaacatttaccggattctttttcctcatcaatatattttttccttgactcaggctcctttagttgtccatcaaatt 39161903  T
Q  104 ttttcaactttaacttaggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactc 203  Q
    | |||| |||| ||||||||||||||||||||||| |||| ||||| |||||||| |||| ||||||  | | |||||||| ||||| ||||||   |||    
T  39161902 tattcatctttgacttaggatccttgacttgtccttcaaattgcttttcttttaagttgagctccttctcatttactttgagcttatactctttcgtctc 39161803  T
Q  204 aagttctttccaccgtccttcaaattgcttct-ctttgattcaaagctctcaacttggctttcaaattgcttctttttt 281  Q
     ||||| |||||||||||||||||||| ||||  |||||||  |||  ||||||||| |||||||| ||||| ||||||    
T  39161802 cagttcattccaccgtccttcaaattgtttctgttttgatttgaagtcctcaacttgtctttcaaaatgcttatttttt 39161724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 7 - 281
Target Start/End: Original strand, 39207192 - 39207470
Alignment:
Q  7 tctttcaataaactagatgaataagaacatttacccgattgtgtttcttca---atatattttttccttgacccaagcttcgtcggtcgtaaatcgaatt 103  Q
    ||||||||||| ||||||||| ||||||||||||| |||| | |||| |||   |||||||||||||||||| || ||| | |  || ||  ||| ||||    
T  39207192 tctttcaataatctagatgaagaagaacatttaccggattctttttcctcatcaatatattttttccttgactcaggctcctttagttgtccatcaaatt 39207291  T
Q  104 ttttcaactttaacttaggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactc 203  Q
    | |||| |||| ||||||||||||||||||||||| |||| ||||| |||||||| |||| ||||||  | | |||||||| ||||| ||||||   |||    
T  39207292 tattcatctttgacttaggatccttgacttgtccttcaaattgcttttcttttaagttgagctccttctcatttactttgagcttatactctttcgtctc 39207391  T
Q  204 aagttctttccaccgtccttcaaattgcttct-ctttgattcaaagctctcaacttggctttcaaattgcttctttttt 281  Q
     ||||| |||||||||||||||||||| ||||  |||||||  |||  ||||||||| |||||||| ||||| ||||||    
T  39207392 cagttcattccaccgtccttcaaattgtttctgttttgatttgaagtcctcaacttgtctttcaaaatgcttatttttt 39207470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 120 - 239
Target Start/End: Original strand, 39192439 - 39192558
Alignment:
Q  120 aggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgt 219  Q
    ||||||||||||| ||||| |||||||||| |||||||| |||| |||||| |||| | |||||||||||||||||||| ||||||||||  |||| |||    
T  39192439 aggatccttgactagtccttcaaactgcttttcttttaagttgagctccttcacctttgctttgaacttattctcttttgactcaagttcactccatcgt 39192538  T
Q  220 ccttcaaattgcttctcttt 239  Q
    ||||| ||||||||||||||    
T  39192539 ccttctaattgcttctcttt 39192558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 120 - 239
Target Start/End: Original strand, 39198119 - 39198238
Alignment:
Q  120 aggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgt 219  Q
    ||||||||||||| ||||| |||||||||| |||||||| |||| |||||| |||| | |||||||||||||||||||| ||||||||||  |||| |||    
T  39198119 aggatccttgactagtccttcaaactgcttttcttttaagttgagctccttcacctttgctttgaacttattctcttttgactcaagttcactccatcgt 39198218  T
Q  220 ccttcaaattgcttctcttt 239  Q
    ||||| ||||||||||||||    
T  39198219 ccttctaattgcttctcttt 39198238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 264
Target Start/End: Original strand, 39389020 - 39389281
Alignment:
Q  7 tctttcaataaactagatgaataagaacatttacccgattgtgtttct---tcaatatattttttccttgacccaagcttcgtcggtcgtaaatcgaatt 103  Q
    |||||||||||||| |||||||||||||||||||| |||| | ||||    |||| |||||||||||||||| |  ||| | |   | ||  ||| ||||    
T  39389020 tctttcaataaactggatgaataagaacatttaccggattctttttccccatcaaaatattttttccttgactcgggctcctttatttgtccatcaaatt 39389119  T
Q  104 ttttcaactttaacttaggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactc 203  Q
    | |||| |||| ||| |||||| |||||||| ||| |||||||||| |||||||| |||| |||||| |||| |||||||||||||| |||||| |||||    
T  39389120 tattcagctttgactcaggatcgttgacttgcccttcaaactgcttttcttttaagttgagctccttcacctttactttgaacttatactctttcaactc 39389219  T
Q  204 aagttctttccaccgtccttcaaattgcttctc-tttgattcaaagctctcaacttggcttt 264  Q
     ||||| ||||| |||| || |||| ||| ||| |||||||  |||  ||||||||||||||    
T  39389220 cagttcgttccatcgtcttttaaatcgctgctcttttgatttgaagtcctcaacttggcttt 39389281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 120 - 281
Target Start/End: Complemental strand, 39222929 - 39222767
Alignment:
Q  120 aggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgt 219  Q
    ||||||||||||||||||| |||||  ||| ||||| || |||| |||||| |||| | |||||||||||||||||| | |||||||||  ||||| |||    
T  39222929 aggatccttgacttgtccttcaaaccacttttctttgaagttgagctccttcacctttgctttgaacttattctcttctgactcaagtttattccatcgt 39222830  T
Q  220 ccttcaaattgcttctc-tttgattcaaagctctcaacttggctttcaaattgcttctttttt 281  Q
     |||||||||||||||| ||||||| |||   ||| ||||||||||| || ||||||||||||    
T  39222829 tcttcaaattgcttctcttttgatttaaactcctcgacttggctttcgaaatgcttctttttt 39222767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 121 - 308
Target Start/End: Complemental strand, 39459295 - 39459107
Alignment:
Q  121 ggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgtc 220  Q
    |||||||||||||||||| |||| ||||| ||||||||||||| ||| || ||  |||||||||||||||||||||     || | |||||||| | ||     
T  39459295 ggatccttgacttgtccttcaaattgcttgtcttttaacttgagctctttcactagtactttgaacttattctcttcagcatcgaattctttccgctgtt 39459196  T
Q  221 cttcaaattgcttctc-tttgattcaaagctctcaacttggctttcaaattgcttcttttttaaactgagctccttaacccggcctttg 308  Q
    |||||||||||||||| ||| |||  |||  |||||  |||||||||||||||||||||||| || |||||| ||||||| | ||||||    
T  39459195 cttcaaattgcttctcttttaatttgaagtcctcaaactggctttcaaattgcttcttttttgaattgagctgcttaacctgacctttg 39459107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 121 - 308
Target Start/End: Original strand, 39473409 - 39473597
Alignment:
Q  121 ggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgtc 220  Q
    ||||||| ||||| |||| ||| ||||||||||||||||||||    ||| ||  ||||||||||||||||||||||| |||| ||||||||||| |||     
T  39473409 ggatcctcgacttctccttcaacctgcttctcttttaacttgagtgacttcactagtactttgaacttattctcttttgactcgagttctttccatcgtt 39473508  T
Q  221 cttcaaattgcttctct-ttgattcaaagctctcaacttggctttcaaattgcttcttttttaaactgagctccttaacccggcctttg 308  Q
    |||||||||||||| || ||||||  ||   |||||| | | ||| |||||||||||||||| |  | |||||||||||||| ||||||    
T  39473509 cttcaaattgcttcgctattgatttgaattcctcaaccttggttttaaattgcttctttttttatttaagctccttaacccgacctttg 39473597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 124 - 298
Target Start/End: Original strand, 39397852 - 39398027
Alignment:
Q  124 tccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgtcctt 223  Q
    ||||||||| | ||| ||| |||||||||||||||||  | |||||  |||| ||||||||||| |||||||||| ||||||||| |||||||||| |||    
T  39397852 tccttgactcgacctgcaacctgcttctcttttaactcaagctcctgcacctttactttgaactgattctcttttgactcaagttttttccaccgttctt 39397951  T
Q  224 caaattgcttctcttt-gattcaaagctctcaacttggctttcaaattgcttcttttttaaactgagctccttaac 298  Q
    ||| |||||| ||||| ||||  ||   |||||||||||||||||| ||||| |||| |||   ||||||||||||    
T  39397952 caatttgcttatcttttgatttgaaatcctcaacttggctttcaaagtgcttattttgtaattcgagctccttaac 39398027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 100 - 239
Target Start/End: Original strand, 39414761 - 39414900
Alignment:
Q  100 aattttttcaactttaacttaggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctctttta 199  Q
    ||||||| || |||| ||| ||||||||| ||||||||| ||||||| ||||| |||||||||| ||| || ||| ||| ||||||||||||||| |||     
T  39414761 aatttttccagctttgactcaggatccttaacttgtccttcaaactgtttctcatttaacttgagctctttgaccagtagtttgaacttattctcatttg 39414860  T
Q  200 actcaagttctttccaccgtccttcaaattgcttctcttt 239  Q
     ||  ||||||||||| ||| |||||||||||||||||||    
T  39414861 tcttgagttctttccatcgttcttcaaattgcttctcttt 39414900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 124 - 239
Target Start/End: Complemental strand, 39468379 - 39468264
Alignment:
Q  124 tccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgtcctt 223  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||| |||| ||||||||||  |||||||||| |||  | |||||| |||||| | |    
T  39468379 tccttgacttgtccttcaatctgcttctcttttaacttgaactccttcacctttactttgaaccgattctcttttgacttcaattctttacaccgttcat 39468280  T
Q  224 caaattgcttctcttt 239  Q
    |||||||||| |||||    
T  39468279 caaattgcttatcttt 39468264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 151 - 239
Target Start/End: Complemental strand, 39137895 - 39137807
Alignment:
Q  151 tcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgtccttcaaattgcttctcttt 239  Q
    ||||||||||||| ||| || ||| ||||||||||||||||||||||| |||| ||||||||||||||| |||||| ||||||||||||    
T  39137895 tcttttaacttgagctctttgaccagtactttgaacttattctcttttgactcgagttctttccaccgttcttcaatttgcttctcttt 39137807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 39223001 - 39222932
Alignment:
Q  9 tttcaataaactagatgaataagaacatttacccgattgtgtttct---tcaatatattttttccttgac 75  Q
    ||||||||||| |||||||||||||||||||||||||| | |||||   |||||||||||||||||||||    
T  39223001 tttcaataaacaagatgaataagaacatttacccgattctttttctccatcaatatattttttccttgac 39222932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 120 - 235
Target Start/End: Original strand, 39381510 - 39381625
Alignment:
Q  120 aggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgt 219  Q
    |||||||||| |||||| | |||||||||||||||||||||||| ||| || | || ||||||||||| |||||||||| | ||  ||||||||   |||    
T  39381510 aggatccttgtcttgtctttcaaactgcttctcttttaacttgagctcattcatctttactttgaactcattctcttttgattcgtgttctttcattcgt 39381609  T
Q  220 ccttcaaattgcttct 235  Q
     ||||||||| |||||    
T  39381610 tcttcaaatttcttct 39381625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 121 - 236
Target Start/End: Original strand, 39421832 - 39421947
Alignment:
Q  121 ggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgtc 220  Q
    |||||||||||| || |||||||  |||| |||||||| |||| ||| || ||  ||||||||||||||||||||||| |||  |||||||||||  ||     
T  39421832 ggatccttgactagtgctccaaatcgcttgtcttttaatttgagctctttcactagtactttgaacttattctcttttgacttgagttctttccattgtt 39421931  T
Q  221 cttcaaattgcttctc 236  Q
    ||||||||| ||||||    
T  39421932 cttcaaatttcttctc 39421947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 187 - 308
Target Start/End: Complemental strand, 39152561 - 39152439
Alignment:
Q  187 ttattctcttttaactcaagttctttccaccgtccttcaaattgcttctcttt-gattcaaagctctcaacttggctttcaaattgcttcttttttaaac 285  Q
    |||||||||||| |||| || ||||||||||||  |||||||||||||||||| | ||  |||  |||||| ||| ||||||||| |||||||||| |      
T  39152561 ttattctcttttgactcgagctctttccaccgtttttcaaattgcttctcttttgttttgaagtcctcaacctggatttcaaatttcttcttttttgatt 39152462  T
Q  286 tgagctccttaacccggcctttg 308  Q
    | |||||||||||| | ||||||    
T  39152461 taagctccttaacctgacctttg 39152439  T

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Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 39421688 - 39421733
Alignment:
Q  1 tgaaactctttcaataaactagatgaataagaacatttacccgatt 46  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||    
T  39421688 tgaaactctttcaataaattagatgaataagaacatttaccagatt 39421733  T

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Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 238
Target Start/End: Original strand, 39494461 - 39494559
Alignment:
Q  140 caaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgtccttcaaattgcttctctt 238  Q
    |||||||||||||||||  ||| | |||||| || ||| |||||||||| || |||||| ||||  | |||||||  |||||||||||||| |||||||    
T  39494461 caaactgcttctcttttggcttcagctccttcacgtgtgctttgaacttcttgtcttttgactctggctctttccctcgtccttcaaattgtttctctt 39494559  T

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Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 39468485 - 39468448
Alignment:
Q  9 tttcaataaactagatgaataagaacatttacccgatt 46  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  39468485 tttcaataaactagatgaataagaacatttaccagatt 39468448  T

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Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 42
Target Start/End: Complemental strand, 39370285 - 39370254
Alignment:
Q  11 tcaataaactagatgaataagaacatttaccc 42  Q
    ||||||||||||||||||||||||||||||||    
T  39370285 tcaataaactagatgaataagaacatttaccc 39370254  T

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Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 39381367 - 39381412
Alignment:
Q  1 tgaaactctttcaataaactagatgaataagaacatttacccgatt 46  Q
    ||||| ||||||| ||||||| ||||||||||||||||||| ||||    
T  39381367 tgaaattctttcagtaaactatatgaataagaacatttaccagatt 39381412  T

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Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 39459431 - 39459387
Alignment:
Q  9 tttcaataaactagatgaataagaacatttacccgattgtgtttc 53  Q
    ||||||||| ||| ||||||||||||| |||||||||| ||||||    
T  39459431 tttcaataagctaaatgaataagaacacttacccgattctgtttc 39459387  T

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Target: chr6 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 124 - 281
Target Start/End: Complemental strand, 16113339 - 16113181
Alignment:
Q  124 tccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgtcctt 223  Q
    |||||||||||| || ||| |||||||||||||||||||| ||||||  ||| ||||||||||| |||||||||| | || ||||||||||||||| |||    
T  16113339 tccttgacttgtacttcaatctgcttctcttttaacttgagctccttctcctttactttgaactgattctcttttgattcgagttctttccaccgttctt 16113240  T
Q  224 caaattgcttctc-tttgattcaaagctctcaacttggctttcaaattgcttctttttt 281  Q
    |||||||||| || |||||||  ||   ||||||||||||||| || ||||| ||||||    
T  16113239 caaattgcttatcgtttgatttgaaatactcaacttggctttccaaatgcttatttttt 16113181  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 16113478 - 16113441
Alignment:
Q  9 tttcaataaactagatgaataagaacatttacccgatt 46  Q
    |||||||||||||||||||| |||||| ||||||||||    
T  16113478 tttcaataaactagatgaatgagaacacttacccgatt 16113441  T

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Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 151 - 239
Target Start/End: Complemental strand, 19807845 - 19807757
Alignment:
Q  151 tcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgtccttcaaattgcttctcttt 239  Q
    ||||||||||||| ||| || ||| ||||||||||||||||||||||| |||| ||||||||||||| | |||||| ||| ||||||||    
T  19807845 tcttttaacttgagctctttgaccagtactttgaacttattctcttttgactcgagttctttccacctttcttcaatttgattctcttt 19807757  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 19808007 - 19807963
Alignment:
Q  1 tgaaactctttcaataaactagatgaataagaacatttacccgat 45  Q
    |||||||| ||| ||||||||||||||||||||| ||||||||||    
T  19808007 tgaaactccttctataaactagatgaataagaacttttacccgat 19807963  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 33561174 - 33561135
Alignment:
Q  7 tctttcaataaactagatgaataagaacatttacccgatt 46  Q
    ||||||||||||||||||||| ||||||||||||| ||||    
T  33561174 tctttcaataaactagatgaagaagaacatttaccggatt 33561135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 17059642 - 17059602
Alignment:
Q  1 tgaaactctttcaataaactagatgaataagaacatttacc 41  Q
    ||||| ||||| |||||||||||||||||| ||||||||||    
T  17059642 tgaaattcttttaataaactagatgaataacaacatttacc 17059602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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