View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10842_low_8 (Length: 299)

Name: NF10842_low_8
Description: NF10842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10842_low_8
NF10842_low_8
[»] chr3 (4 HSPs)
chr3 (131-289)||(36179953-36180113)
chr3 (1-102)||(36180323-36180424)
chr3 (54-95)||(25855309-25855350)
chr3 (41-95)||(23641471-23641525)
[»] chr4 (8 HSPs)
chr4 (169-287)||(11906999-11907117)
chr4 (174-287)||(11911245-11911358)
chr4 (179-267)||(45304276-45304367)
chr4 (37-83)||(22076988-22077034)
chr4 (56-95)||(24404217-24404256)
chr4 (56-102)||(22315808-22315854)
chr4 (37-85)||(5892812-5892860)
chr4 (39-91)||(30507326-30507378)
[»] chr2 (6 HSPs)
chr2 (37-96)||(7742303-7742362)
chr2 (56-95)||(21190934-21190973)
chr2 (56-95)||(30175538-30175577)
chr2 (56-95)||(45156355-45156394)
chr2 (53-91)||(22788089-22788127)
chr2 (37-93)||(37182373-37182429)
[»] chr8 (5 HSPs)
chr8 (37-95)||(5973369-5973427)
chr8 (37-91)||(5721425-5721479)
chr8 (37-95)||(7944774-7944832)
chr8 (38-96)||(38009489-38009547)
chr8 (43-83)||(41063080-41063120)
[»] scaffold0227 (1 HSPs)
scaffold0227 (201-281)||(15780-15861)
[»] chr6 (3 HSPs)
chr6 (37-102)||(4036786-4036851)
chr6 (32-95)||(20611499-20611562)
chr6 (37-94)||(21183856-21183913)
[»] chr1 (1 HSPs)
chr1 (37-95)||(39135070-39135128)


Alignment Details
Target: chr3 (Bit Score: 121; Significance: 5e-62; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 131 - 289
Target Start/End: Complemental strand, 36180113 - 36179953
Alignment:
Q  131 aagtagtactagtaagtactgccccactnnnnnnn--ttccttacgagagctctgataccacacgtaatgtttttccttaatctctttctctcttctgat 228  Q
    ||||||||||| ||||||||||||||||         |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36180113 aagtagtactactaagtactgccccactaaaaaaaaattccttacgacagctctgataccacacgtaatgtttttccttaatctctttctctcttctgat 36180014  T
Q  229 accagtaccacgcgttccatcacaccaccactccatcgaacttccgttttcttcttctctg 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36180013 accagtaccacgcgttccatcacaccaccactccatcgaacttccgttttcttcttctctg 36179953  T

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Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 36180424 - 36180323
Alignment:
Q  1 aattatgacatagaggcgagtaaaatgtactccaaccagggccggaccttgaagtgtgcaaaccgctcaatagagctgggcctccccaaggtatgatcct 100  Q
    |||||||||||||| ||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  36180424 aattatgacatagatgcgagtaaaatgtactccaaccagggctggcctttgaagtgtgcaaaccgctcaatagagttgggcctccccaaggtatgagcct 36180325  T
Q  101 ca 102  Q
    ||    
T  36180324 ca 36180323  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 25855309 - 25855350
Alignment:
Q  54 gtgtgcaaaccgctcaatagagctgggcctccccaaggtatg 95  Q
    ||||||||||||| ||||||| ||||||||||||||||||||    
T  25855309 gtgtgcaaaccgcccaatagaactgggcctccccaaggtatg 25855350  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 23641525 - 23641471
Alignment:
Q  41 gccggaccttgaagtgtgcaaaccgctcaatagagctgggcctccccaaggtatg 95  Q
    ||||||| |||  |||||||||||||||||| || | ||||||||||||||||||    
T  23641525 gccggactttggggtgtgcaaaccgctcaatggaaccgggcctccccaaggtatg 23641471  T

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Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 169 - 287
Target Start/End: Complemental strand, 11907117 - 11906999
Alignment:
Q  169 cttacgagagctctgataccacacgtaatgtttttccttaatctctttctctcttctgataccagtaccacgcgttccatcacaccaccactccatcgaa 268  Q
    |||| |||| ||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||  |    
T  11907117 cttatgagaactctgataccacacgtaatatttttccttattctctttctctcttctgatatcagtaccatgcgttccatcacaccaccactccatcaga 11907018  T
Q  269 cttccgttttcttcttctc 287  Q
    |||||||||||||||||||    
T  11907017 cttccgttttcttcttctc 11906999  T

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Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 174 - 287
Target Start/End: Complemental strand, 11911358 - 11911245
Alignment:
Q  174 gagagctctgataccacacgtaatgtttttccttaatctctttctctcttctgataccagtaccacgcgttccatcacaccaccactccatcgaacttcc 273  Q
    |||| ||||||||||||||||||| |||||||||| |||||||||||||||||| | |||||||||||||||| ||||||||||||||||||  ||| ||    
T  11911358 gagaactctgataccacacgtaatatttttccttattctctttctctcttctgaaatcagtaccacgcgttccctcacaccaccactccatcagactccc 11911259  T
Q  274 gttttcttcttctc 287  Q
    ||||||||||||||    
T  11911258 gttttcttcttctc 11911245  T

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Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 179 - 267
Target Start/End: Complemental strand, 45304367 - 45304276
Alignment:
Q  179 ctctgataccacacgtaatgtttttccttaatctctttctctcttctgataccagt---accacgcgttccatcacaccaccactccatcga 267  Q
    |||||||||||||| ||||||||||||||| | | ||||||||||||||||| |||   |||||||||||||||||||||||||||||||||    
T  45304367 ctctgataccacacataatgtttttccttattatatttctctcttctgatacaagtatcaccacgcgttccatcacaccaccactccatcga 45304276  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 22076988 - 22077034
Alignment:
Q  37 cagggccggaccttgaagtgtgcaaaccgctcaatagagctgggcct 83  Q
    |||||||||||||||  |||||||||||||||||| |||||||||||    
T  22076988 cagggccggaccttggggtgtgcaaaccgctcaatggagctgggcct 22077034  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 95
Target Start/End: Original strand, 24404217 - 24404256
Alignment:
Q  56 gtgcaaaccgctcaatagagctgggcctccccaaggtatg 95  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  24404217 gtgcaaacagctcaatggagctgggcctccccaaggtatg 24404256  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 102
Target Start/End: Complemental strand, 22315854 - 22315808
Alignment:
Q  56 gtgcaaaccgctcaatagagctgggcctccccaaggtatgatcctca 102  Q
    |||||||| ||||||| ||||||| |||||||||||||||| |||||    
T  22315854 gtgcaaacagctcaatggagctggacctccccaaggtatgagcctca 22315808  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 5892812 - 5892860
Alignment:
Q  37 cagggccggaccttgaagtgtgcaaaccgctcaatagagctgggcctcc 85  Q
    |||||||||||||||| |||||||||| | ||||| ||||| |||||||    
T  5892812 cagggccggaccttgaggtgtgcaaacagttcaatggagctaggcctcc 5892860  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 30507378 - 30507326
Alignment:
Q  39 gggccggaccttgaagtgtgcaaaccgctcaatagagctgggcctccccaagg 91  Q
    |||||||||||||  ||||||||||| |||||| ||  |||||||||||||||    
T  30507378 gggccggaccttggggtgtgcaaaccactcaatggaattgggcctccccaagg 30507326  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 96
Target Start/End: Complemental strand, 7742362 - 7742303
Alignment:
Q  37 cagggccggaccttgaagtgtgcaaaccgctcaatagagctgggcctccccaaggtatga 96  Q
    ||||| ||||||||| |||||||||||||||||||||| | |||||| ||||||||||||    
T  7742362 cagggtcggaccttggagtgtgcaaaccgctcaatagaaccgggccttcccaaggtatga 7742303  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 95
Target Start/End: Complemental strand, 21190973 - 21190934
Alignment:
Q  56 gtgcaaaccgctcaatagagctgggcctccccaaggtatg 95  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  21190973 gtgcaaacagctcaatggagctgggcctccccaaggtatg 21190934  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 95
Target Start/End: Original strand, 30175538 - 30175577
Alignment:
Q  56 gtgcaaaccgctcaatagagctgggcctccccaaggtatg 95  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  30175538 gtgcaaacagctcaatggagctgggcctccccaaggtatg 30175577  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 95
Target Start/End: Complemental strand, 45156394 - 45156355
Alignment:
Q  56 gtgcaaaccgctcaatagagctgggcctccccaaggtatg 95  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  45156394 gtgcaaacagctcaatggagctgggcctccccaaggtatg 45156355  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 91
Target Start/End: Complemental strand, 22788127 - 22788089
Alignment:
Q  53 agtgtgcaaaccgctcaatagagctgggcctccccaagg 91  Q
    |||||||||||||||||||||| | ||||||||||||||    
T  22788127 agtgtgcaaaccgctcaatagaaccgggcctccccaagg 22788089  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 37182373 - 37182429
Alignment:
Q  37 cagggccggaccttgaagtgtgcaaaccgctcaatagagctgggcctccccaaggta 93  Q
    ||||| |||||||||  |||||||||  ||||||| ||||||| |||||||||||||    
T  37182373 cagggtcggaccttggggtgtgcaaagagctcaatggagctggacctccccaaggta 37182429  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 5973427 - 5973369
Alignment:
Q  37 cagggccggaccttgaagtgtgcaaaccgctcaatagagctgggcctccccaaggtatg 95  Q
    ||||||| |||||||  || ||||||||||||||| |||||||||||||||||||||||    
T  5973427 cagggccagaccttggggtctgcaaaccgctcaatggagctgggcctccccaaggtatg 5973369  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 91
Target Start/End: Original strand, 5721425 - 5721479
Alignment:
Q  37 cagggccggaccttgaagtgtgcaaaccgctcaatagagctgggcctccccaagg 91  Q
    ||||||||| | |||  |||||||||||||||||| || ||||||||||||||||    
T  5721425 cagggccgggctttggggtgtgcaaaccgctcaatggaactgggcctccccaagg 5721479  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 7944832 - 7944774
Alignment:
Q  37 cagggccggaccttgaagtgtgcaaaccgctcaatagagctgggcctccccaaggtatg 95  Q
    ||||| |||||||||  |||||||||||| ||||| || |||||| |||||||||||||    
T  7944832 cagggtcggaccttggggtgtgcaaaccgttcaatggaactgggcttccccaaggtatg 7944774  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 96
Target Start/End: Complemental strand, 38009547 - 38009489
Alignment:
Q  38 agggccggaccttgaagtgtgcaaaccgctcaatagagctgggcctccccaaggtatga 96  Q
    ||||||||||||||  ||||| |||  ||||||| |||||| |||||||||||||||||    
T  38009547 agggccggaccttggggtgtgtaaagagctcaatggagctgagcctccccaaggtatga 38009489  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 41063080 - 41063120
Alignment:
Q  43 cggaccttgaagtgtgcaaaccgctcaatagagctgggcct 83  Q
    |||||||||  |||||||||||||||||| |||||||||||    
T  41063080 cggaccttggggtgtgcaaaccgctcaatggagctgggcct 41063120  T

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Target: scaffold0227 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 281
Target Start/End: Original strand, 15780 - 15861
Alignment:
Q  201 tttccttaatctctttctctcttctgataccagtaccacgcgttccatca-caccaccactccatcgaacttccgttttctt 281  Q
    |||||||| |||||||||||||||||||||  |||||| ||||| ||||| ||||||  |||||||  |||||| |||||||    
T  15780 tttccttattctctttctctcttctgatactcgtaccatgcgttgcatcatcaccactcctccatcagacttcctttttctt 15861  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 4036786 - 4036851
Alignment:
Q  37 cagggccggaccttgaagtgtgcaaaccgctcaatagagctgggcctccccaaggtatgatcctca 102  Q
    ||||| |||||||||  ||||||||| |||||||| ||| ||||||||||||| |||||| |||||    
T  4036786 cagggtcggaccttggggtgtgcaaaacgctcaatggagttgggcctccccaatgtatgagcctca 4036851  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 20611499 - 20611562
Alignment:
Q  32 ccaaccagggccggaccttgaagtgtgcaaaccgctcaatagagctgggcctccccaaggtatg 95  Q
    |||| ||||| |||||||||  |||||||||  ||||||| |||||||||||||| ||||||||    
T  20611499 ccaagcagggtcggaccttggggtgtgcaaagagctcaatggagctgggcctccctaaggtatg 20611562  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 21183913 - 21183856
Alignment:
Q  37 cagggccggaccttgaagtgtgcaaaccgctcaatagagctgggcctccccaaggtat 94  Q
    ||||||||||| |||  ||||||||||||||||||  |||| |||| |||||||||||    
T  21183913 cagggccggactttggggtgtgcaaaccgctcaatgaagcttggccaccccaaggtat 21183856  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 39135128 - 39135070
Alignment:
Q  37 cagggccggaccttgaagtgtgcaaaccgctcaatagagctgggcctccccaaggtatg 95  Q
    |||||||| ||||||  |||||||||  ||||||| || ||||||||||||||||||||    
T  39135128 cagggccgaaccttggggtgtgcaaagagctcaatggaactgggcctccccaaggtatg 39135070  T

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