View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10843_1 (Length: 486)
Name: NF10843_1
Description: NF10843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10843_1 |
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| [»] scaffold0091 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-165; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 140 - 464
Target Start/End: Original strand, 39661321 - 39661647
Alignment:
| Q |
140 |
cactgatgcatcacaaacacatatgataacattgaattttgttgtattttcaaatgattatcagtatccatgtgtcagttgtggtgtttgtgtcatgtct |
239 |
Q |
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|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39661321 |
cactgatgcatcacaaacacatgtgatttcattgaattttgttgtattttcaaatgattatcagtatccatgtgtcagttgtggtgtttgtgtcatgtct |
39661420 |
T |
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| Q |
240 |
gaattagttcttcatccaaacagacatgtcgatcctgataatttgaaaatttaacataattcaatgaaatcacgtgtgtgggtg-tgcatcagtgttgaa |
338 |
Q |
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| T |
39661421 |
gaattagttcttcatccaaacagacatgtcgatcctgataatttgaaaatttaacataattcaatgaaatcacgtgtgtgggtgttgcatcagtgttgaa |
39661520 |
T |
|
| Q |
339 |
c-ctgacacaagtcagaccggaacatgccttcgatcagaagtgttggtgttacaaagctaataatgtttattctattgtattatattatatgcttgtgat |
437 |
Q |
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| T |
39661521 |
cactgacacatgtcagaccggaacatgccttcgatcagaagtgttggtgttacaaagctaataatgtttattctattgtattatattatatgcttgtgat |
39661620 |
T |
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| Q |
438 |
gtgactcttgtgcagtcatgtgatgat |
464 |
Q |
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| T |
39661621 |
gtgactcttgtgcagtcatgtgatgat |
39661647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 39661246 - 39661302
Alignment:
| Q |
29 |
aaggtatcttcgatttcatcaccaattgttattccactgtattctatgttttgtagc |
85 |
Q |
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| T |
39661246 |
aaggtatcttcgatttcatcaccaattgttattccactgtattctatgttttgtagc |
39661302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 392
Target Start/End: Original strand, 4344968 - 4344996
Alignment:
| Q |
364 |
gccttcgatcagaagtgttggtgttacaa |
392 |
Q |
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| T |
4344968 |
gccttcgatcagaagtgttggtgttacaa |
4344996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 117
Target Start/End: Original strand, 10970991 - 10971026
Alignment:
| Q |
82 |
tagcaccgacacttctgattgaaggcgtatccggtg |
117 |
Q |
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| T |
10970991 |
tagcaccgacacttctgattgaaggcgtatctggtg |
10971026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 109
Target Start/End: Complemental strand, 43754861 - 43754830
Alignment:
| Q |
78 |
tttgtagcaccgacacttctgattgaaggcgt |
109 |
Q |
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| T |
43754861 |
tttgtagcaccgacacttctgattgaaggcgt |
43754830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 1056096 - 1056059
Alignment:
| Q |
80 |
tgtagcaccgacacttctgattgaaggcgtatccggtg |
117 |
Q |
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| T |
1056096 |
tgtagcaccgacacttctaattgaaggtgtatccggtg |
1056059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0091 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0091
Description:
Target: scaffold0091; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 7681 - 7648
Alignment:
| Q |
80 |
tgtagcaccgacacttctgattgaaggcgtatcc |
113 |
Q |
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| T |
7681 |
tgtagcaccgacacttcagattgaaggcgtatcc |
7648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 5228264 - 5228231
Alignment:
| Q |
80 |
tgtagcaccgacacttctgattgaaggcgtatcc |
113 |
Q |
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| T |
5228264 |
tgtagcaccgacacttcagattgaaggcgtatcc |
5228231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 3451967 - 3451930
Alignment:
| Q |
80 |
tgtagcaccgacacttctgattgaaggcgtatccggtg |
117 |
Q |
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| T |
3451967 |
tgtagcaccgacacttgtgattgaagacgtatccggtg |
3451930 |
T |
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