View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10843_2 (Length: 395)
Name: NF10843_2
Description: NF10843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10843_2 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 4e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 197 - 368
Target Start/End: Original strand, 9503211 - 9503382
Alignment:
| Q |
197 |
aagtagataaagtttttcattccaaagaaaactattgtatgataatgaatgaatgtaatattgatttccttgtttgtacacagccaaacaggcctgatga |
296 |
Q |
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| T |
9503211 |
aagtagataaattttttcattccaaagaaaactattgtatgataatgaatgaaggtaatattgatttccttgtttgtacacagccaaacaggcctgatga |
9503310 |
T |
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| Q |
297 |
gttgatgagaatagaagaagctggtgggagagtcataaactggaatggccaccgtgttcttggtgttcttgc |
368 |
Q |
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| T |
9503311 |
gttgatgagaatagaagaagctggtggaagagtcataaactggaatggccaccgtgttcttggtgttcttgc |
9503382 |
T |
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Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 9503093 - 9503142
Alignment:
| Q |
70 |
attgcagcaaaatgcaatatctatacattgttgcatctagattctagagt |
119 |
Q |
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| T |
9503093 |
attgcagcaaattgcaatatctatacattgttgcatctagattctagagt |
9503142 |
T |
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