View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10843_4 (Length: 360)
Name: NF10843_4
Description: NF10843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10843_4 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 134 - 347
Target Start/End: Complemental strand, 303620 - 303407
Alignment:
| Q |
134 |
attgatatatgctattttatgttagattcataccgtatgatcttgcattgaaaagaatttcctgaaacatgcgggaactgtcaatgaatatgaatctgga |
233 |
Q |
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| T |
303620 |
attgatatatgctattttatgttagattcataccatatgatcttgcattgaaaagaatttcctgaaacatgcgggaactgtcaatgaaaatgaatctgga |
303521 |
T |
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| Q |
234 |
accaggtagattattgttgagattgctcaacatagccttcacattttcattgaagggttgcactagcatgttcacttgttcagagcagcttccactcatg |
333 |
Q |
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| T |
303520 |
accaggtagattattgttgagattgctcaacataaccttcacattttcattgaagggttgcactagcatgttcacttgttcagagcagcttccactcatg |
303421 |
T |
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| Q |
334 |
ctttgagacaatat |
347 |
Q |
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| T |
303420 |
ctttgagacaatat |
303407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 303760 - 303671
Alignment:
| Q |
1 |
tttggaatggtagacaagttatttgacctctgtttcttccaagcccacaacaccctctattcacatcagtaaatcctacacacaaacaaa |
90 |
Q |
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| T |
303760 |
tttggaatggtagacaagttatttgacctctgtttcttccaaggccacaacaccctctattcacatcagtaaatcctacacacaaacaaa |
303671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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