View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10843_6 (Length: 340)
Name: NF10843_6
Description: NF10843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10843_6 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 30 - 313
Target Start/End: Original strand, 19936821 - 19937104
Alignment:
| Q |
30 |
agattattctggtgttgttaaaatatctgatgatggcaatgatcttgtggtattgaatggaaagaaagaggtgatttggacatccaacgcaccgaatgtt |
129 |
Q |
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||||| ||||||||||||||||||||||||| |||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
19936821 |
agattcttctggtgttgttaaaatatctgataatggtaatgatctcgtggtattgaacggaaagaaagaggtgatttggacatccaacgcaccgaatgtt |
19936920 |
T |
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| Q |
130 |
gcaaccaattcaagtttgaagcttttagattcagggaaccttgtactacttgaaggcacaacagaaagaaccatgtgggagagtttccagcatccttcaa |
229 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19936921 |
gcaaccaattcaagttcgaagcttttagattcagggaaccttgtactacttgaaggcacaacagaaagaaccatgtgggagagtttccagcatccttcaa |
19937020 |
T |
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| Q |
230 |
atgtaatgctgccaaacatgaaacttactagcaacaaaataacaggtgagaaagtaaaacaaacatcatggaaaacaccttatg |
313 |
Q |
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| T |
19937021 |
atgtaatgctgccaaacatgaaacttactagcaacaaaataacaggtgagaaagtaaaacaaacatcatggaaaacaccttatg |
19937104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 30 - 313
Target Start/End: Original strand, 19967960 - 19968243
Alignment:
| Q |
30 |
agattattctggtgttgttaaaatatctgatgatggcaatgatcttgtggtattgaatggaaagaaagaggtgatttggacatccaacgcaccgaatgtt |
129 |
Q |
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| T |
19967960 |
agattcttctggtgttgttaaaatatctgataatggtaatgatctcgtggtattgaacggaaagaaagaggtgatttggacatccaacgcaccgaatgtt |
19968059 |
T |
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| Q |
130 |
gcaaccaattcaagtttgaagcttttagattcagggaaccttgtactacttgaaggcacaacagaaagaaccatgtgggagagtttccagcatccttcaa |
229 |
Q |
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| T |
19968060 |
gcaaccaattcaagttcgaagcttttagattcagggaaccttgtactacttgaaggcacaacagaaagaaccatgtgggagagtttccagcatccttcaa |
19968159 |
T |
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| Q |
230 |
atgtaatgctgccaaacatgaaacttactagcaacaaaataacaggtgagaaagtaaaacaaacatcatggaaaacaccttatg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19968160 |
atgtaatgctgccaaacatgaaacttactagcaacaaaataacaggtgagaaagtaaaacaaacatcatggaaaacaccttatg |
19968243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 66 - 193
Target Start/End: Complemental strand, 47602602 - 47602475
Alignment:
| Q |
66 |
caatgatcttgtggtattgaatggaaagaaagaggtgatttggacatccaacgcaccgaatgttgcaaccaattcaagtttgaagcttttagattcaggg |
165 |
Q |
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| T |
47602602 |
caatgatcttgtggtactgaatggaaaggaagaggtgatttagtcatcaaaagcgccgaatattgcaaccaattcgagttccaaacttttaggttcagag |
47602503 |
T |
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| Q |
166 |
aaccttgtactacttgaaggcacaacag |
193 |
Q |
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| T |
47602502 |
agccttgtactacttgaatgcagaacag |
47602475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 304
Target Start/End: Original strand, 20287273 - 20287330
Alignment:
| Q |
247 |
atgaaacttactagcaacaaaataacaggtgagaaagtaaaacaaacatcatggaaaa |
304 |
Q |
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||||||||||| || ||||||| |||||||||||||||| ||| ||||||||||||| |
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| T |
20287273 |
atgaaacttacaagaaacaaaagaacaggtgagaaagtacaactcacatcatggaaaa |
20287330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 304
Target Start/End: Complemental strand, 20064560 - 20064503
Alignment:
| Q |
247 |
atgaaacttactagcaacaaaataacaggtgagaaagtaaaacaaacatcatggaaaa |
304 |
Q |
| |
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||||||||| ||| |||||||| ||||||||||||| ||||| || ||||||||||| |
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| T |
20064560 |
atgaaactttctatcaacaaaagaacaggtgagaaatcaaaactaagatcatggaaaa |
20064503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 304
Target Start/End: Original strand, 20301846 - 20301903
Alignment:
| Q |
247 |
atgaaacttactagcaacaaaataacaggtgagaaagtaaaacaaacatcatggaaaa |
304 |
Q |
| |
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||||||||| ||| |||||||| ||||||||| ||| ||||| |||||||||||||| |
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| T |
20301846 |
atgaaactttctatcaacaaaagaacaggtgaaaaatcaaaactaacatcatggaaaa |
20301903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 246 - 304
Target Start/End: Complemental strand, 40825866 - 40825808
Alignment:
| Q |
246 |
catgaaacttactagcaacaaaataacaggtgagaaagtaaaacaaacatcatggaaaa |
304 |
Q |
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|||||||||||| |||||||||| |||||||||||||||| ||| ||||||||||||| |
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| T |
40825866 |
catgaaacttacaagcaacaaaagaacaggtgagaaagtacaactcacatcatggaaaa |
40825808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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