View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10843_8 (Length: 322)
Name: NF10843_8
Description: NF10843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10843_8 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 130 - 322
Target Start/End: Original strand, 7333217 - 7333409
Alignment:
| Q |
130 |
gaacctgtggaatatcaaagtcagataggaaatgctatcaatcttcttgataaattaataaaaacttgcaccattgatagacaggagtcaaccaaattag |
229 |
Q |
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| T |
7333217 |
gaacctgtggaatatcaaagtgagataggaaatgctatcaatcttcttcagaatttaataaaaacttgcaccatcaaaagacaggagtcaaccaaattag |
7333316 |
T |
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| Q |
230 |
ttggttgtaaaaaagaagaacgagatttggtctcaaagttgaccacagggagcggtagtaatccttccacactttcaattgtggggatgaaag |
322 |
Q |
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| T |
7333317 |
ttggttgtaaaaaagaagagcaagatttggtctcaaagttgacctcagggagtggtagtaatccttccgcactttccattgtggggatgaaag |
7333409 |
T |
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Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 30 - 129
Target Start/End: Original strand, 8682744 - 8682843
Alignment:
| Q |
30 |
gtgatgacaacaaaacggccaatgaaggcggtggtaaaaatgcaggtggtggcacaaaagtagaggaagtgaagccagcaccacagccagtgaacgagca |
129 |
Q |
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| T |
8682744 |
gtgatgacaacaaaacggccaatgaaggcggtggtaaaaatgcaggtggtggctcaaaagtagaggaagtgaagccagcaccacagccagtgaaagagca |
8682843 |
T |
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