View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10843_low_1 (Length: 310)
Name: NF10843_low_1
Description: NF10843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10843_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 112 - 294
Target Start/End: Complemental strand, 11666030 - 11665852
Alignment:
| Q |
112 |
acctaacccatattcttaatgatatctttatatatcatgagccacacttatgaggatcggtcacaaatctgagtatcatggtttaattaaggaggcaacc |
211 |
Q |
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| T |
11666030 |
acctaacccatattcttaatgatatctttatatatcatgagccacacttatgaggatcggtcacaaatctgagtatcatggt----ctaaggaggaaagc |
11665935 |
T |
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| Q |
212 |
tcccagtcatcgaggggtctggcctttatatagtctaaaatcttccttaaacactcaaaattagagtatagagatcaaagaaa |
294 |
Q |
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| T |
11665934 |
tcccagtcatcgaggggtctggcctttatatagtctaaaatcttccttaaacactcaaaattagagtatagagatcaaagaaa |
11665852 |
T |
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Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 11666169 - 11666074
Alignment:
| Q |
15 |
aggagaaataacggcacgctcaaaaagcaacataacttatgaaaacccaaaataaaccacccacgaactagggtggatttctaaaggcttaagaaa |
110 |
Q |
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| T |
11666169 |
aggagaaatagcggcacgctcaaaaaacaacataacttatgaaaacccaaaataaaccacccacgaactagggtggatttctaaaggcttaagaaa |
11666074 |
T |
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