View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10844_1 (Length: 779)

Name: NF10844_1
Description: NF10844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10844_1
NF10844_1
[»] chr3 (1 HSPs)
chr3 (1-779)||(34540773-34541551)


Alignment Details
Target: chr3 (Bit Score: 716; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 716; E-Value: 0
Query Start/End: Original strand, 1 - 779
Target Start/End: Original strand, 34540773 - 34541551
Alignment:
Q  1 actaatcagtatcacctgaaagacatgtacaacaggcttgacttgccagaacaaaagaacgttatcattctgcatcccttcacctatacaaaaaagaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34540773 actaatcagtatcacctgaaagacatgtacaacaggcttgacttgccagaacaaaagaacgttatcattctgcatcccttcacctatacaaaaaagaaaa 34540872  T
Q  101 gtaactagcatcagaatgcagcaatggatcaatctatatgtgtctagggaatgtatttatgttattcttgcattttgaacactacctatcttccattttg 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||    
T  34540873 gtaactagcatcagaatgcggcaatggatcaatctatatgtgtctagggaatgcaattatgttattcttgtattttgaacactacctatcttccattttg 34540972  T
Q  201 acatactaattgctaaatcactcaattcaactcatataactcggccattgtttggttacgcaacaggatttccacatttagtcaaaatcacgcaaaaa-t 299  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  34540973 acatactaattgctaaatcgctcaattcaactcatataactcggccattgtttggttacgcaacaggatttccacatttagtcaaaatcacgcaaaaaat 34541072  T
Q  300 tctcatttaaagtgaaactacagttactagcttctcgatttcacgacaaaagggcatctagacgtgcggcagccatgagcaaacgtaaaatcaaacacac 399  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  34541073 tctcatttaaagtgaaactacaattactagcttctcgatttcacgacaaaagggtgtctagacgtgcggcagccatgagcaaacgtaaaatcaaacacac 34541172  T
Q  400 cataagacagtcttaatggaatttgagattggcgaaaataaaaatgatactttaaaaatcaaatcattgagttccatatcttgccactccataatgatag 499  Q
     ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34541173 -ataagacagtcttaatggaattttagattggcgaaaataaaaatgatactttaaaaatcaaatcattgagttccatatcttgccactccataatgatag 34541271  T
Q  500 caataaaatcaacagttaaccaccatagagacaattgaaaataaacaaacaaaagatagagacctgtatcacaaacgcaaattctttgcacattatctgc 599  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34541272 caataaaatcaacagttaaccaccatagagacaattgaaaataaataaacaaaagatagagacctgtatcacaaacgcaaattctttgcacattatctgc 34541371  T
Q  600 aagaaagggttcgtcaaggggaacaggaatcggtccaccattatagctcaaactcctcttttcaagcatcctaaaaaagcagttgaattatcataaatac 699  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34541372 aagaaagggttcgtcaaggggaacaggaatcggtccaccattatagctcaaactcctcttttcaagcatcctaaaaaagcagttgaattatcataaatac 34541471  T
Q  700 accaagcaacacagaacccgatagaataattaaaattagttgaattaaagtctcgaattagcctcacacaaaactaaaac 779  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  34541472 accaagcaacacagaacccgatagaataattaaaattagttgaattaaagtcccgaattaccctcacacaaaactaaaac 34541551  T

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