View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10844_3 (Length: 392)
Name: NF10844_3
Description: NF10844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10844_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 26 - 392
Target Start/End: Original strand, 34540255 - 34540624
Alignment:
| Q |
26 |
tcacacggtccttcttcgctaagctgtcaaagcaaaatacaaacaatattcacaaagctctgaaccacattaacagaacaaagagattctagactaagca |
125 |
Q |
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| T |
34540255 |
tcacacggtccttcttcgctaagctgtcaaagcaaaatacaaacaatattcacaaagctctgaaccacattaacagaacaaagagattctagactaagca |
34540354 |
T |
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| Q |
126 |
aagtacaattagagggaatgtgatattgatgcattatggaacattgcatgttacagcattaacatattgtaatatcattttatcttcnnnnnnnnccttt |
225 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
34540355 |
aagtacaattagagggaatgtgatattgatgcataatggaacattgcatgttacagcattaacatattgtaatatcatattatcttcttttttttccttt |
34540454 |
T |
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| Q |
226 |
gtttactatatgcatgtttctattatatcaacctttgttactttctcttttcggttagaaaccattctagaagttatgggt----cagcaccttctacca |
321 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
34540455 |
gtttgctatatgcatgtttctattatatcaacttttgttactttctcttttcggttagaaaccattctagaagttgtgggtcagccagcaccttctacca |
34540554 |
T |
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| Q |
322 |
tgagctgattacagattctgcttatgtgtcgttgtaatgggggaagtttattatgggttttatcaaccgat |
392 |
Q |
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||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34540555 |
tgagctgattacagattctgcttatatgtcgttgtaat-ggggaagtttattatgggttttatcaaccgat |
34540624 |
T |
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