View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10844_4 (Length: 344)
Name: NF10844_4
Description: NF10844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10844_4 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 8 - 199
Target Start/End: Original strand, 5504671 - 5504862
Alignment:
| Q |
8 |
cgaagaatattttgaataagctataaatttttt-gagggtttattttaaaaaaatccagaacagtattaaatagnnnnnnnnntctaaaaatgaatgaaa |
106 |
Q |
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| T |
5504671 |
cgaacaatattttgaataagctataaatttcttagaggttttattttaaaaaaatccagaacagtattaaatagaaaaaaga-tctaagaatgaatgaaa |
5504769 |
T |
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| Q |
107 |
ggttaaaactcctacaatggaaagagcagcctcgtaattgcatttcgtttcttaagctcttcactcatttccaacattaatcctccacatcaa |
199 |
Q |
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| T |
5504770 |
ggttaaaactcctacaatggaaagagtagcctcataattgcatttcgtctcttaagttctttactcatttccaacattaatcctccacatcaa |
5504862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 8 - 199
Target Start/End: Complemental strand, 38321025 - 38320830
Alignment:
| Q |
8 |
cgaagaatattttgaataagctataaattttttgagggtttattttaaaaaaat--ccagaacagtattaaatagnnnnnnnnn--tctaaaaatgaatg |
103 |
Q |
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| T |
38321025 |
cgaacaatattttgaataagatataaattttttgaggttttatttaaaaaaaaaaaccagaacagtattaaatagaaaaaaaaaaatctaagaatgaatg |
38320926 |
T |
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| Q |
104 |
aaaggttaaaactcctacaatggaaagagcagcctcgtaattgcatttcgtttcttaagctcttcactcatttccaacattaatcctccacatcaa |
199 |
Q |
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| T |
38320925 |
aaaggttaaaactcctacaatggaaagagtagcctcataattgcatttcgtctcttaagttcttaactcatttccaacattaatcctccacatcaa |
38320830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 8 - 199
Target Start/End: Original strand, 34997195 - 34997387
Alignment:
| Q |
8 |
cgaagaatattttgaataagctataaat-tttttgagggtttattttaaaaaaa-tccagaacagtattaaatagnnnnnnnnntctaaaaatgaatgaa |
105 |
Q |
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| T |
34997195 |
cgaacaatattttgagtaagctataaaaatttttgaggttttatttcaaaaaaaatctagaacagtattaaatagaaaaaaaaatctaagaatgaatgaa |
34997294 |
T |
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| Q |
106 |
aggttaaaactcctacaatggaaagagcagcctcgtaattgcatttcgtttcttaagctcttcactcatttccaacattaatcctccacatcaa |
199 |
Q |
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| T |
34997295 |
aggttaaaactcctacaatggaaagagt-gcctcataattgcatttcgtctcttaagttcttcactcatttccaacattaatcctccacatcaa |
34997387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 262 - 344
Target Start/End: Complemental strand, 18454301 - 18454219
Alignment:
| Q |
262 |
ctgcaatagagtcctggcttttgagtgaaaccatctttctgtagcttctctctagccttgagaataagctctgagtatgtaat |
344 |
Q |
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| T |
18454301 |
ctgcaatagagtcctggcttttgagtgaaaccatctttctgtagcttctctctagccttgagaataagttctgagtatgtaat |
18454219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 220 - 263
Target Start/End: Original strand, 18454235 - 18454278
Alignment:
| Q |
220 |
ttattctcaaggctagagagaagctacagaaagatggtttcact |
263 |
Q |
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| T |
18454235 |
ttattctcaaggctagagagaagctacagaaagatggtttcact |
18454278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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