View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10844_6 (Length: 324)
Name: NF10844_6
Description: NF10844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10844_6 |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 39 - 309
Target Start/End: Original strand, 1339522 - 1339792
Alignment:
| Q |
39 |
caactaattaaaaatctagtactaagcaacagccttacttcagtagttagagctccccaaagaaaaacacgcatccgaaattgagggaggccatatgacc |
138 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1339522 |
caacaaattaaaaatctagtactaagcaacagccttacttcagtagttagagctccccaaagaaaaacacgcatccgaaattgagggaggccatatgacc |
1339621 |
T |
|
| Q |
139 |
ctgcagccatcattcccatacgagcttggtaattcattgccactagacggcctacagcataacgccccagaaatccaccggcaaatttcaagatgtcaac |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1339622 |
ctgcagccatcattcccatacgagcttggtaattcattgccactagacggcctacagcataacgccccagaaatcctccggcaaatttcaagatgtcaac |
1339721 |
T |
|
| Q |
239 |
aacattctccatcagaacatacttaggcttcaagaaattgataatgtccatgtaaacaattaattgcttat |
309 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1339722 |
aacattctccatcagaacatacttaggcttcaagaaattgataatgtccatgtaaacaattaattgcttat |
1339792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 47 - 309
Target Start/End: Original strand, 31941367 - 31941631
Alignment:
| Q |
47 |
taaaaatctagtacta--agcaacagccttacttcagtagttagagctccccaaagaaaaacacgcatccgaaattgagggaggccatatgaccctgcag |
144 |
Q |
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|||||| ||||||||| ||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31941367 |
taaaaaactagtactataagcaatggccttacttcagtggcaagagctccccaaagaaaaacacgcatccgaaattgaggaaggccatatgaccctgcag |
31941466 |
T |
|
| Q |
145 |
ccatcattcccatacgagcttggtaattcattgccactagacggcctacagcataacgccccagaaatccaccggcaaatttcaagatgtcaacaacatt |
244 |
Q |
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||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||||| |
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| T |
31941467 |
ccatcattcccattcgagcttggtaattcatggccactagacggcctacagcataacgccccagaaacccaccagcaaatttcaaaatgtctacaacatt |
31941566 |
T |
|
| Q |
245 |
ctccatcagaacatacttaggcttcaagaaattgataatgtccatgtaaacaattaattgcttat |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
31941567 |
ctccatcagaacatacttaggcttcaagaaatcaataatgttcatgtaaacaattaattgcttat |
31941631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 72 - 250
Target Start/End: Original strand, 13537942 - 13538120
Alignment:
| Q |
72 |
cttacttcagtagttagagctccccaaagaaaaacacgcatccgaaattgagggaggccatatgaccctgcagccatcattcccatacgagcttggtaat |
171 |
Q |
| |
|
||||||||||| | ||||||||||| |||||||| |||||||||||||| || |||||||| |||| ||||||||||||||||| | |||||| |||| |
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| T |
13537942 |
cttacttcagtgggaagagctccccagagaaaaacgcgcatccgaaattggggaaggccataacacccagcagccatcattcccattctagcttgataat |
13538041 |
T |
|
| Q |
172 |
tcattgccactagacggcctacagcataacgccccagaaatccaccggcaaatttcaagatgtcaacaacattctccat |
250 |
Q |
| |
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|||| || || |||||||||| ||||||||| |||| ||| ||||| |||||||||| |||||||| ||||||||||| |
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| T |
13538042 |
tcatggctacaagacggcctaaagcataacgtcccaaaaacccaccaacaaatttcaaaatgtcaaccacattctccat |
13538120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 70 - 309
Target Start/End: Original strand, 9391727 - 9391966
Alignment:
| Q |
70 |
gccttacttcagtagttagagctccccaaagaaaaacacgcatccgaaattgagggaggccatatgaccctgcagccatcattcccatacgagcttggta |
169 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| || |
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| T |
9391727 |
gccttacttcagtggcaagagctccccaaagaaaaacacgcatccgaaattgaggaaggccatatgaccctgcagccatcattcccattcgagcttgata |
9391826 |
T |
|
| Q |
170 |
attcattgccactagacggcctacagcataacgccccagaaatccaccggcaaatttcaagatgtcaacaacattctccatcagaacatacttaggcttc |
269 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
9391827 |
attcatggccactagacggcccacagcataacgccccagaaacccaccagcaaatttcaaaatgtctacaacattctccatcagaacatacttaggcttc |
9391926 |
T |
|
| Q |
270 |
aagaaattgataatgtccatgtaaacaattaattgcttat |
309 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||| |
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| T |
9391927 |
aagaaatcaataatgttcatgtaaacaattaattgcttat |
9391966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 70 - 309
Target Start/End: Original strand, 5641432 - 5641671
Alignment:
| Q |
70 |
gccttacttcagtagttagagctccccaaagaaaaacacgcatccgaaattgagggaggccatatgaccctgcagccatcattcccatacgagcttggta |
169 |
Q |
| |
|
||||||||| |||| ||||| ||||||||||||| |||||||||||||||||| ||||| || ||||| ||||||||||||||||| | |||||| || |
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| T |
5641432 |
gccttacttgggtaggaagagcgccccaaagaaaaaaacgcatccgaaattgaggaaggccgtacgaccccgcagccatcattcccattctagcttgata |
5641531 |
T |
|
| Q |
170 |
attcattgccactagacggcctacagcataacgccccagaaatccaccggcaaatttcaagatgtcaacaacattctccatcagaacatacttaggcttc |
269 |
Q |
| |
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|| ||| ||||||||||| ||||||||||||||||||||| | ||||| ||||||||||| |||||||||||||||||||||| | ||| ||||||||| |
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| T |
5641532 |
atgcatggccactagacgtcctacagcataacgccccagatacccaccagcaaatttcaatatgtcaacaacattctccatcaatatatatttaggcttc |
5641631 |
T |
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| Q |
270 |
aagaaattgataatgtccatgtaaacaattaattgcttat |
309 |
Q |
| |
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|| || | ||||| |||||||| || |||| |||||||| |
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| T |
5641632 |
aaaaattcaataatatccatgtagacgattagttgcttat |
5641671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 34541551 - 34541505
Alignment:
| Q |
1 |
gttttagttttgtgtgaggctaattcgagactttaattcaactaatt |
47 |
Q |
| |
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||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
34541551 |
gttttagttttgtgtgagggtaattcgggactttaattcaactaatt |
34541505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 271
Target Start/End: Complemental strand, 30166102 - 30166051
Alignment:
| Q |
220 |
caaatttcaagatgtcaacaacattctccatcagaacatacttaggcttcaa |
271 |
Q |
| |
|
||||| |||| |||||||| ||||||||||| | |||||||||||||||||| |
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|
| T |
30166102 |
caaatctcaatatgtcaaccacattctccattaaaacatacttaggcttcaa |
30166051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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