View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10845_low_1 (Length: 602)
Name: NF10845_low_1
Description: NF10845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10845_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 266 - 513
Target Start/End: Complemental strand, 32378168 - 32377924
Alignment:
| Q |
266 |
ctcttttttaagaaatgaattaaataaattcaactttatacagaaattataaataaatttggttttgacactattgtcacggactcacacctaacaaaac |
365 |
Q |
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| T |
32378168 |
ctcttttttaagaaatgaattaaataaattcaactttatacagaaattataaatcaatttggttttgacactattgtcacggactcacacctaacaaaac |
32378069 |
T |
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| Q |
366 |
ttcctttaaatatatatattttttattgagttattcctttgaagatttgaaaccatagaaaaattgcattgatcccaataccacttctttaccaaataac |
465 |
Q |
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| T |
32378068 |
ttcctttaaatat---ttttttttattgagttattcctttgaagatttgaaaccatagaaaaattgcattgatcccaataccacttctttaccaaataac |
32377972 |
T |
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| Q |
466 |
ccgccaacattttttcccatgannnnnnngtgtccacataaagaaacg |
513 |
Q |
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| T |
32377971 |
ccgccaacattttttcccatgatttttttgtgtccacataaagaaacg |
32377924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 32378416 - 32378242
Alignment:
| Q |
19 |
gtaagatatatactaacgcatgtttggagtgaagctccaatttgtatgttcattggagaatctcatgcaagacgtggattatttgtatgctcttagcggt |
118 |
Q |
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| T |
32378416 |
gtaagatttatactaacgcatgtttggagtgaagctccaatttgtatgctcattggagaatcccatgcaagatgtggattatttgtatgctcttagcggt |
32378317 |
T |
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| Q |
119 |
aaatttaaatttatgttaacgtcaaatatttgtatgctctttgttgaa--ccatgcaagatgcggattattaaaa |
191 |
Q |
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| T |
32378316 |
aaatttaaatttatgttaacgtcaaatatttgtatgctctttgttgaaccccatgcaagacgcggattattaaaa |
32378242 |
T |
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