View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10845_low_10 (Length: 244)
Name: NF10845_low_10
Description: NF10845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10845_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 26 - 233
Target Start/End: Complemental strand, 12797273 - 12797064
Alignment:
| Q |
26 |
ttgctactcaagaaaaccttcgtgttagttggactaatggaactttggaacc-ttaatccaaatataattctaaggnnnnnnnnn-cttagactaatgat |
123 |
Q |
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| T |
12797273 |
ttgctactcaagaagaccttcgtgttagttggagtaatggagctttggaacccttaatccaaatataattctaaggttttttttttcttggactaatgat |
12797174 |
T |
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| Q |
124 |
ttcaagccttcaaatatataaaatactaattttgaatgtgagaatatcaaaatcttaaacctaccccaagagtattggagacccaagatcgtattttcaa |
223 |
Q |
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|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
12797173 |
ttcaagccttcaaatatataaaatacaaattttgaatgttagaatatcaaaatcttaaacctaccccaagtgtattggagacccaagatcgtattttcta |
12797074 |
T |
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| Q |
224 |
ttgcattcat |
233 |
Q |
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|||||||||| |
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| T |
12797073 |
ttgcattcat |
12797064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 12797405 - 12797306
Alignment:
| Q |
1 |
aggcatggtttttacgaattctcttttgctactcaagaaaaccttcgtgttagttggactaatggaactttggaaccttaatccaaatataattctaagg |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
12797405 |
aggcatggtttttacgagttctcttttgctactcaagaaaaccttcgtgttagttggagtaatggaactttggaaccttaatccaaatataattctaagg |
12797306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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