View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10845_low_11 (Length: 241)
Name: NF10845_low_11
Description: NF10845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10845_low_11 |
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| [»] chr4 (5 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 30719670 - 30719892
Alignment:
| Q |
19 |
ccactagcatcaatagctacggaaattggttgatttgccacagctttctgcagtgcctgctcattgttggcagggacatcttcatacccggtaatggtaa |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30719670 |
ccactagcatcaatagctacggaaattggttgatttgccacagctttctgcagtgcctgctcattgttggcagggacatcttcatacccggtaatagtaa |
30719769 |
T |
|
| Q |
119 |
ctgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgttgagtccatgattttgaatgatgaattt |
218 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30719770 |
ctgcatggatggatgctttgtttgcactgcaagttccgtcaacaccttgataggggtattgagcttcagtgttgagtccatgattttgaatgatgaattt |
30719869 |
T |
|
| Q |
219 |
gaaagcatcatccataagaccac |
241 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
30719870 |
gaaagcatcatccataagaccac |
30719892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 30881689 - 30881467
Alignment:
| Q |
19 |
ccactagcatcaatagctacggaaattggttgatttgccacagctttctgcagtgcctgctcattgttggcagggacatcttcatacccggtaatggtaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30881689 |
ccactagcatcaatagctacggaaattggttgatttgccacagctttctgcagtgcctgctcattgttggcagggacatcttcatacccggtaatagtaa |
30881590 |
T |
|
| Q |
119 |
ctgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgttgagtccatgattttgaatgatgaattt |
218 |
Q |
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||||||||||||||||||| ||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30881589 |
ctgcatggatggatgctttgtttgcactgcaagttccgtcaacaccttgataggggtattgagcttcagtgttgagtccatgattttgaatgatgaattt |
30881490 |
T |
|
| Q |
219 |
gaaagcatcatccataagaccac |
241 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
30881489 |
gaaagcatcatccataagaccac |
30881467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 44731106 - 44731328
Alignment:
| Q |
19 |
ccactagcatcaatagctacggaaattggttgatttgccacagctttctgcagtgcctgctcattgttggcagggacatcttcatacccggtaatggtaa |
118 |
Q |
| |
|
|||||||||||||| || || ||||| ||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44731106 |
ccactagcatcaatggcaacagaaataggttgatttgcgacagctttttgcaatgcctgctcattgttggcagggacatcttcatacccggtaatggtag |
44731205 |
T |
|
| Q |
119 |
ctgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgttgagtccatgattttgaatgatgaattt |
218 |
Q |
| |
|
||||||| ||||| ||||| |||||| |||| ||||| ||||||||||||||||| ||| |||||||| | ||||| |||||||||||||||||||| |
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| T |
44731206 |
ctgcatgaatggacgctttgtttgcattgcatgttccgtcaacaccttgataagggtatgcggcttcagtactaagtccgtgattttgaatgatgaattt |
44731305 |
T |
|
| Q |
219 |
gaaagcatcatccataagaccac |
241 |
Q |
| |
|
||||||||| ||||||||||||| |
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| T |
44731306 |
gaaagcatcgtccataagaccac |
44731328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 16867492 - 16867715
Alignment:
| Q |
18 |
accactagcatcaatagctacggaaattggttgatttgccacagctttctgcagtgcctgctcattgttggcagggacatcttcatacccggtaatggta |
117 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||| ||||| ||||| || ||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
16867492 |
accactagcatcaatggctacggaaatcggttgattagccactgctttttgtagtgcctgctcattgttggtcgggacatcttcatacccagtaatggta |
16867591 |
T |
|
| Q |
118 |
actgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgttgagtccatgattttgaatgatgaatt |
217 |
Q |
| |
|
||||||| ||||||| |||| ||||| |||| || || ||||||||||||||||| || | ||||| || || ||||||||||||||||||||||||| |
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| T |
16867592 |
actgcattgatggatcctttgtttgcgttgcatgtcccgtcaacaccttgataagggtagttggcttcggtatttagtccatgattttgaatgatgaatt |
16867691 |
T |
|
| Q |
218 |
tgaaagcatcatccataagaccac |
241 |
Q |
| |
|
|||||||||| ||||||||||||| |
|
|
| T |
16867692 |
tgaaagcatcgtccataagaccac |
16867715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 30892772 - 30892550
Alignment:
| Q |
19 |
ccactagcatcaatagctacggaaattggttgatttgccacagctttctgcagtgcctgctcattgttggcagggacatcttcatacccggtaatggtaa |
118 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||| ||||| ||||| |||||||| | ||||||||| || |||||||||||||| || | ||| ||| |
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| T |
30892772 |
ccactcgcatcaatggctacggaaattggttgattagccactgctttttgcagtgcattctcattgtttgccgggacatcttcatatccagcaatagtag |
30892673 |
T |
|
| Q |
119 |
ctgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgttgagtccatgattttgaatgatgaattt |
218 |
Q |
| |
|
| ||| || | || | || |||||||||||||||||| |||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
30892672 |
cagcaggggttgaagtttcatttgcactgcaagttccgtcaacaccttgataggggtattgagcttcagtgtggagtccatgattttgaatgatgaattt |
30892573 |
T |
|
| Q |
219 |
gaaagcatcatccataagaccac |
241 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
30892572 |
gaaagcatcatccataagaccac |
30892550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 8899304 - 8899082
Alignment:
| Q |
19 |
ccactagcatcaatagctacggaaattggttgatttgccacagctttctgcagtgcctgctcattgttggcagggacatcttcatacccggtaatggtaa |
118 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
8899304 |
ccactagcatcaattgctacagaaattggttgatttgccactgctttttgcagtgcttgctcattgttggcaggaacatcttcatacccggtaatagtag |
8899205 |
T |
|
| Q |
119 |
ctgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgttgagtccatgattttgaatgatgaattt |
218 |
Q |
| |
|
||| || |||||||||||||||||| | || |||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8899204 |
ttgcttgaatggatgctttatttgcattacatgttccatcaacaccctgataggggtattgagcttcagtgttgagtccatgattttgaatgatgaattt |
8899105 |
T |
|
| Q |
219 |
gaaagcatcatccataagaccac |
241 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
8899104 |
gaaagcatcatccataagaccac |
8899082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 146 - 241
Target Start/End: Complemental strand, 31727335 - 31727240
Alignment:
| Q |
146 |
tgcaagttccatcaacaccttgataaggatattgagcttcagtgttgagtccatgattttgaatgatgaatttgaaagcatcatccataagaccac |
241 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||| |||||||||| | ||||||| |||||| |||||||||| |||||||||||||||||||||| |
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|
| T |
31727335 |
tgcatgttccatcaacaccttgataagggtattcagcttcagtgctaagtccattattttggatgatgaattcaaaagcatcatccataagaccac |
31727240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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