View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10845_low_12 (Length: 236)
Name: NF10845_low_12
Description: NF10845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10845_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 8270135 - 8270343
Alignment:
| Q |
14 |
caaaggctatagtcaaacttcaaccaaatgtttcaattccagcagtgtttgtgtttggagattcaattacggatacaggaaataacaactttnnnnnnnc |
113 |
Q |
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| T |
8270135 |
caaaggctatagtcaaacttcaaccaaatgtttcaattccagcagtgtttgtgtttggagattcaattacggatacaggaaataacaactttaaaaaaac |
8270234 |
T |
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| Q |
114 |
aatagctcgatgcgattttgcaccatatggaaaagattttccaggagggattgcaacaggtcgatttagcaacggaaaggttccatcagaccttataggt |
213 |
Q |
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| T |
8270235 |
aatagctcgatgcgattttgcaccatatggaaaagattttccaggagggattgcaacaggtcgatttagcaacggaaaggttccatcagaccttataggt |
8270334 |
T |
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| Q |
214 |
atacatatt |
222 |
Q |
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||||||||| |
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| T |
8270335 |
atacatatt |
8270343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 214
Target Start/End: Original strand, 8230984 - 8231187
Alignment:
| Q |
14 |
caaaggctatagtcaaacttcaaccaaatgtttcaattccagcagtgtttgtgtttggagattcaattacggatacagg---aaataacaactttnnnnn |
110 |
Q |
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| T |
8230984 |
caaagggtatagtccaacttccaccaaatgtttcagttccagcagtgttggtgtttggagattctatcgtggatacaggtaacaataacaacaatttgag |
8231083 |
T |
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| Q |
111 |
nncaatagctcgatgcgattttgcaccatatggaaaagattttccaggagggattgcaacaggtcgatttagcaacggaaaggttccatcagaccttata |
210 |
Q |
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| T |
8231084 |
aacaacagctcgttgcaattttccaccttatgggaaagattttaaaggaggaattccaaccggaagatttagcaatggaaaagttccctcagacttcata |
8231183 |
T |
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| Q |
211 |
ggta |
214 |
Q |
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|||| |
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| T |
8231184 |
ggta |
8231187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 8252684 - 8252762
Alignment:
| Q |
136 |
ccatatggaaaagattttccaggagggattgcaacaggtcgatttagcaacggaaaggttccatcagaccttataggta |
214 |
Q |
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| T |
8252684 |
ccatatggaaaagattttcaaggaggaattccaacaggaagatttagcaatggaaaggttccagcagatcttataggta |
8252762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 200
Target Start/End: Original strand, 8242621 - 8242772
Alignment:
| Q |
49 |
attccagcagtgtttgtgtttggagattcaattacggatacaggaaataacaactttnnnnnnncaatagctcgatgcgattttgcaccatatggaaaag |
148 |
Q |
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| T |
8242621 |
attccagcagtgtttgtgtttggagattcaatcatggatactggaaataacaacaacatgacaacaccatctcggtgcaattaccctccatatgggaaag |
8242720 |
T |
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| Q |
149 |
attttccaggagggattgcaacaggtcgatttagcaacggaaaggttccatc |
200 |
Q |
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| T |
8242721 |
attttaaaggaggaattccaacaggaagatttagcaacggaaaggttccatc |
8242772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 8252584 - 8252650
Alignment:
| Q |
36 |
accaaatgtttcaattccagcagtgtttgtgtttggagattcaattacggatacaggaaataacaac |
102 |
Q |
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| T |
8252584 |
accaaatgcttcgtttccagcagtgtttgtatttggagattcaatcatggatactggaaataacaac |
8252650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 53274196 - 53274254
Alignment:
| Q |
31 |
cttcaaccaaatgtttcaattccagcagtgtttgtgtttggagattcaattacggatac |
89 |
Q |
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| T |
53274196 |
cttccaccaaatgtttcatttccagcagtatttgtgtttggagattcaatcatggatac |
53274254 |
T |
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