View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10845_low_14 (Length: 231)
Name: NF10845_low_14
Description: NF10845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10845_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 9301491 - 9301706
Alignment:
| Q |
1 |
ttgtctgagcaatttgctatagaacttcagcaatgctataaagctcaatctcaggtgactgacgacttagctatggaactatccgagtccagagcttcaa |
100 |
Q |
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| T |
9301491 |
ttgtctgagcaatttgctatagaacttcagcaatgctataaagctcaatctcagatgactgaccacttagctatggaactatccgagtccagagcttcaa |
9301590 |
T |
|
| Q |
101 |
aagctttgcttcaagagaaagaaaatgcaattgctgatatgcaggagttgacagagttaaggttgcttgatgtttcacttttatttatttactttttaag |
200 |
Q |
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| T |
9301591 |
aagctttgcttcaagagaaagaaaatgcaattgctgatatgcaggagttgacagagttaaggttgcttgatgtttcacttttatttatttactttttaag |
9301690 |
T |
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| Q |
201 |
tttgtagctttaaatt |
216 |
Q |
| |
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|||||||||||||||| |
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| T |
9301691 |
tttgtagctttaaatt |
9301706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 22 - 176
Target Start/End: Original strand, 9298992 - 9299149
Alignment:
| Q |
22 |
gaacttcagcaatgctataaagctcaatctcaggtgactgacgacttagctatggaactatccgagtccagagcttcaaaagctttgcttcaagagaaag |
121 |
Q |
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| T |
9298992 |
gaacttcagcaatgctataaagctcaatctttgttgtatgagcaattagttaaggaactatctgagtccagagtttcaaaagctttgcttcaagagaaag |
9299091 |
T |
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| Q |
122 |
aaaatgcaattgctgatatgc---aggagttgacagagttaaggttgcttgatgtttc |
176 |
Q |
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| T |
9299092 |
aaaatgcaatttctgacatgcagaaggagttgatagaattaaggttgcttgatgtttc |
9299149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 9301458 - 9301490
Alignment:
| Q |
22 |
gaacttcagcaatgctataaagctcaatctcag |
54 |
Q |
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| T |
9301458 |
gaacttcagcaatgctataaagctcaatctcag |
9301490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 22 - 176
Target Start/End: Complemental strand, 43188379 - 43188222
Alignment:
| Q |
22 |
gaacttcagcaatgctataaagctcaatctcaggtgactga-cgacttagctatggaactatccgagtccagagcttcaaaagctttgcttcaagagaaa |
120 |
Q |
| |
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||||||||||||||||||||||||||||||| | | | || | |||| | | ||||| || | ||||| |||| ||||||||||| ||||||||||||| |
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| T |
43188379 |
gaacttcagcaatgctataaagctcaatctcggttatccgagcaactt-gttgtggaagtagctgagtctagagtttcaaaagcttcgcttcaagagaaa |
43188281 |
T |
|
| Q |
121 |
gaaaatgcaattgctgatatgc---aggagttgacagagttaaggttgcttgatgtttc |
176 |
Q |
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||||||| ||| ||||||||| ||||||||||||| || ||||||||||||||||| |
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| T |
43188280 |
gaaaatgtgatttctgatatgcagaaggagttgacagaattgaggttgcttgatgtttc |
43188222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 141
Target Start/End: Original strand, 1116173 - 1116292
Alignment:
| Q |
22 |
gaacttcagcaatgctataaagctcaatctcaggtgactga-cgacttagctatggaactatccgagtccagagcttcaaaagctttgcttcaagagaaa |
120 |
Q |
| |
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||||||||||||||||||||||||||||||| | | | || | |||| | | ||||| || | | ||| |||| ||||||||||| ||||||||||||| |
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| T |
1116173 |
gaacttcagcaatgctataaagctcaatctctgttatccgagcaactt-gttgtggaagtagctgcgtctagagtttcaaaagcttcgcttcaagagaaa |
1116271 |
T |
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| Q |
121 |
gaaaatgcaattgctgatatg |
141 |
Q |
| |
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||| |||| ||| |||||||| |
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|
| T |
1116272 |
gaatatgcgatttctgatatg |
1116292 |
T |
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