View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10845_low_15 (Length: 214)
Name: NF10845_low_15
Description: NF10845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10845_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 2e-94; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 14 - 196
Target Start/End: Complemental strand, 38299813 - 38299631
Alignment:
| Q |
14 |
cacagatcaaaagttaaagatatcctattaggaatagtagccagctgttgtttaatattgagtttctcttcagtgtacaaatcctcaaaataaagctcga |
113 |
Q |
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| T |
38299813 |
cacagatcaaaagttaaagatatcctattaggaatagtagccagctgttgtttaatattgagtttctcttcagtgtacaaatcctcaaaataaagctcga |
38299714 |
T |
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| Q |
114 |
caacgtcaggaggaggcaaaacaatatcttgacataaccactccatgatgttcttcattgagtcgtactcgcaatgacgaaag |
196 |
Q |
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| T |
38299713 |
caacgtcaggaggaggcaaaacaatatcttgacttaaccattccatgatgttcttcattgagtcgtactcgcaatgacgaaag |
38299631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 97
Target Start/End: Complemental strand, 38320558 - 38320475
Alignment:
| Q |
14 |
cacagatcaaaagttaaagatatcctattaggaatagtagccagctgttgtttaatattgagtttctcttcagtgtacaaatcc |
97 |
Q |
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| T |
38320558 |
cacagatcaacagttaaagatatcctattaggaatggtagccaaatcctgtttaagcttgagtttcgctttcgtgtacaaatcc |
38320475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 38305732 - 38305663
Alignment:
| Q |
14 |
cacagatcaaaagttaaagatatcctattaggaatagtagccagctgttgtttaatattgagtttctctt |
83 |
Q |
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| T |
38305732 |
cacaaatcaaaagttaaagatatcctattaggaatggtagccaattcttgtttaagcttcagtttctctt |
38305663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 38316460 - 38316379
Alignment:
| Q |
14 |
cacagatcaaaagttaaagatatcctattaggaatagtagccagctgttgtttaatattgagtttctcttcagtgtacaaat |
95 |
Q |
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| T |
38316460 |
cacaaatcaaaagttaaagatatcctattaggaatgctagccaattcttgtttaagctttagtttctctttcgtgtacaaat |
38316379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 38325305 - 38325251
Alignment:
| Q |
14 |
cacagatcaaaagttaaagatatcctattaggaatagtagccagctgttgtttaa |
68 |
Q |
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| T |
38325305 |
cacaaatcaaaagttaaagataccctattaggaatggtagccaattgttgtttaa |
38325251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 38308459 - 38308385
Alignment:
| Q |
20 |
tcaaaagttaaagatatcctattaggaatagtagccagctgttgtttaatattgagtttctcttcagtgtacaaa |
94 |
Q |
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| T |
38308459 |
tcaaaggttaaagatatcttataaggaatggtagccagttgttgtttgagcttatgtttctcttccgtgtacaaa |
38308385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 38850885 - 38850966
Alignment:
| Q |
14 |
cacagatcaaaagttaaagatatcctattaggaatagtagccagctgttgtttaatattgagtttctcttcagtgtacaaat |
95 |
Q |
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| T |
38850885 |
cacaaatcaaaagataaagatatcctattaggaatggtagttaattgttgtttaagcttaggtttctctttcgtgtacaaat |
38850966 |
T |
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