View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10845_low_4 (Length: 298)
Name: NF10845_low_4
Description: NF10845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10845_low_4 |
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| [»] chr7 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 151 - 298
Target Start/End: Complemental strand, 24905863 - 24905716
Alignment:
| Q |
151 |
gatccccttaaattcaatagattatttgagttgtcgttgttgaagagtgaatcggtttttggcatgcatttgttagggtggggtttggagggggcagtgt |
250 |
Q |
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| T |
24905863 |
gatccccttaaattcaatagattatttgagttgtcgttgttgaagagtgaatcggtttttggcatgcatttgttagggtggggtttggagggggcagcgt |
24905764 |
T |
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| Q |
251 |
ggagttggatacgtaggttgtttgggtgggaagaggagttagtggggg |
298 |
Q |
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| T |
24905763 |
ggagttggagacgtaggttgtttgggtgggaagaggagttagtggggg |
24905716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 24906003 - 24905943
Alignment:
| Q |
11 |
atgaaactggaaggaacgaaaagagtggaatgtgagattattgttaattgtatcatagatg |
71 |
Q |
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| T |
24906003 |
atgaaactggaaggaacgaaaagagtggaatgtgagattattgttaattgtatcatagatg |
24905943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 166 - 298
Target Start/End: Original strand, 12606179 - 12606311
Alignment:
| Q |
166 |
aatagattatttgagttgtcgttgttgaagagtgaatcggtttttggcatgcatttgttagggtggggtttggagggggcagtgtggagttggatacgta |
265 |
Q |
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| T |
12606179 |
aatagattatttgagttgtcgttgttgaagggagaatcggtttttggtatgcatgagttagggtggggggtcgagggggcggcgtggagttggaggcgta |
12606278 |
T |
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| Q |
266 |
ggttgtttgggtgggaagaggagttagtggggg |
298 |
Q |
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| T |
12606279 |
ggctttttgcgtgagaagaggagttagtggggg |
12606311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 162 - 296
Target Start/End: Complemental strand, 32808173 - 32808040
Alignment:
| Q |
162 |
attcaatagattatttgagttgtcgttgttgaagagtgaatcggtttttggcatgcatttgttagggtggggtttggagggggcagtgtggagttggata |
261 |
Q |
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| T |
32808173 |
attcaatagattatatgagttgtcaatgttgaagagtgtgtcggtgttcgacatgcatttgttaggatgggg-gtggagggggcggcgtggagttggagg |
32808075 |
T |
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| Q |
262 |
cgtaggttgtttgggtgggaagaggagttagtggg |
296 |
Q |
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| T |
32808074 |
cgtaggttgtttgcgtgggaagaagagctagtggg |
32808040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 293
Target Start/End: Original strand, 42785153 - 42785278
Alignment:
| Q |
168 |
tagattatttgagttgtcgttgttgaagagtgaa-tcggtttttggcatgcatttgttagggtggggtttggagggggcagtgtggagttggatacgtag |
266 |
Q |
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| T |
42785153 |
tagattatatgagttgtcggtggtgaagagtggtgtcggtgtttgacatgcatttgttaggatgggggt-ggagggggcgacgtggagttggaggcgtag |
42785251 |
T |
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| Q |
267 |
gttgtttgggtgggaagaggagttagt |
293 |
Q |
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| T |
42785252 |
gttgttttcgtgggaagaggaattagt |
42785278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 168 - 288
Target Start/End: Original strand, 23451450 - 23451570
Alignment:
| Q |
168 |
tagattatttgagttgtcgttgttgaagagtgaatcggtttttggcatgcatttgttagggtggggtttggagggggcagtgtggagttggatacgtagg |
267 |
Q |
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| T |
23451450 |
tagattatttgaattgtctttgttgaaggatgcatcagtgtttgatatgcatttgctatggtgggggatggagggggtagcttggaggtggagacgcagg |
23451549 |
T |
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| Q |
268 |
ttgtttgggtgggaagaggag |
288 |
Q |
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| T |
23451550 |
ttgtttgtgtgggaggaggag |
23451570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 23049460 - 23049510
Alignment:
| Q |
168 |
tagattatttgagttgtcgttgttgaagagtgaatcggtttttggcatgca |
218 |
Q |
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| T |
23049460 |
tagattatttgagttgtctttgttgaagggtgaatctgtgtttggtatgca |
23049510 |
T |
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