View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10846_high_4 (Length: 241)
Name: NF10846_high_4
Description: NF10846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10846_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 28799336 - 28799560
Alignment:
| Q |
1 |
tttaaattgctgttaaagtaaattcatgcggtaatatcataaatttttcattggatgtggacaagcatcatcattaatcttaaaataaaactcaataaga |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28799336 |
tttaaattgctgttaaagtaaattcatgtggtaatatcataaatttttcattggatgtggacaagcatcatcattaatcttaaaataaaactcaataaga |
28799435 |
T |
|
| Q |
101 |
tatttgaaatatagtaaacctattataagtttaaactttatacattcctcaatataacttgcatttttgcatgtccatttttgtaggtatttaatttttt |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28799436 |
tatttgaaatatagcaaacctattataagtttaaactttatacattcctcaatataacttgcatttttgcatgtccatttttgtaggtatttaatttttt |
28799535 |
T |
|
| Q |
201 |
cttattgaagacgagggctaaactg |
225 |
Q |
| |
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|||||| |||||||||||||||||| |
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| T |
28799536 |
cttatttaagacgagggctaaactg |
28799560 |
T |
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