View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10846_low_1 (Length: 284)
Name: NF10846_low_1
Description: NF10846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10846_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 12730102 - 12730306
Alignment:
| Q |
1 |
gctaaatcgttgttgaggaacaaagtgtttatttgtctctctagtttgtccttttatccaaagaacaa-ctctgctacaaggcgatgtacatcaataccg |
99 |
Q |
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| T |
12730102 |
gctaaatcgttgttgaggaacaaagtgtttatttgtctctctagtttgtccttttatccaaaggacgggctctgctacaag----------------ccg |
12730185 |
T |
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| Q |
100 |
atgtacatcaatgagtttgtatccgaagtgatataaagtcgatcagattacttatgttaagatatttaattaatgttctatcaactaaaatgtataaata |
199 |
Q |
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| T |
12730186 |
atgtatatcaatgtgtttgtatctgaagtgatataaagtcgatcagattacttgggttaagatatttcattaatgctctatcaactaaagtgtataaata |
12730285 |
T |
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| Q |
200 |
caacttggttgatatattgaa |
220 |
Q |
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|||||| |||||||||||||| |
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| T |
12730286 |
caacttcgttgatatattgaa |
12730306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 212 - 273
Target Start/End: Original strand, 12730650 - 12730711
Alignment:
| Q |
212 |
tatattgaaaggatataaatttaagctctaagtgtgttctcaactttttctcggtatttcat |
273 |
Q |
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| T |
12730650 |
tatattgaaaggatataaatttaagctctaagtgtgttctcaactttttctcggtatttcat |
12730711 |
T |
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