View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10846_low_3 (Length: 242)
Name: NF10846_low_3
Description: NF10846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10846_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 5 - 227
Target Start/End: Complemental strand, 30448421 - 30448199
Alignment:
| Q |
5 |
gagaagcagagaactaactcatgggtaatcattctatacctgatcagacgaggaccattcactttttcttatatttgttcatcttctttattgtgctttg |
104 |
Q |
| |
|
|||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30448421 |
gagaagcaaaaaaccaactcatgggtaatcattctatacctgatcagacgaggaccattcactttttcttatatttgttcatcttctttattgtgctttg |
30448322 |
T |
|
| Q |
105 |
ctatatcaatctcgttggcaatgctcaatataaatatctaacgagtgtgatttctttgattaaacgaaagagtgaaggtatgttaatgcattgaacatga |
204 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30448321 |
ctatatcaatcttgttggcgatgctcaatataaatatctaacaagtgtgatttctttgattaaacgaaagagtgaaggtatgctaatgcattgaacatga |
30448222 |
T |
|
| Q |
205 |
gtgttgataaaactattatattt |
227 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
30448221 |
gtgttgataaaactattatattt |
30448199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 57 - 168
Target Start/End: Complemental strand, 30420238 - 30420126
Alignment:
| Q |
57 |
gaccattcactttttcttatatttgttcatcttctttattgtgcttt-gctatatcaatctcgttggcaatgctcaatataaatatctaacgagtgtgat |
155 |
Q |
| |
|
||||||| | ||| ||||||||||||||||||||||| ||||||||| | | ||||||| ||||||| ||||||||| ||||||||||||| |||||||| |
|
|
| T |
30420238 |
gaccattaattttgtcttatatttgttcatcttctttgttgtgcttttgttgtatcaatttcgttggaaatgctcaacataaatatctaacaagtgtgat |
30420139 |
T |
|
| Q |
156 |
ttctttgattaaa |
168 |
Q |
| |
|
||||||||||||| |
|
|
| T |
30420138 |
ttctttgattaaa |
30420126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 57 - 168
Target Start/End: Complemental strand, 30432808 - 30432696
Alignment:
| Q |
57 |
gaccattcactttttcttatatttgttcatcttctttattgtgcttt-gctatatcaatctcgttggcaatgctcaatataaatatctaacgagtgtgat |
155 |
Q |
| |
|
||||||| | ||| ||||||||||||||||||||||| ||||||||| ||| |||||||||||||| | |||||||| ||||||||| ||| |||||||| |
|
|
| T |
30432808 |
gaccattaattttatcttatatttgttcatcttctttcttgtgcttttgctgtatcaatctcgttgacgatgctcaagataaatatccaacaagtgtgat |
30432709 |
T |
|
| Q |
156 |
ttctttgattaaa |
168 |
Q |
| |
|
||||||||||||| |
|
|
| T |
30432708 |
ttctttgattaaa |
30432696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 168
Target Start/End: Complemental strand, 30443047 - 30442962
Alignment:
| Q |
83 |
tcatcttctttattgtgctttgctatatcaatctcgttggcaatgctcaatataaatatctaacgagtgtgatttctttgattaaa |
168 |
Q |
| |
|
||||||||||| |||||||||| | ||||||| | ||||||||||||||| |||||| | |||||||||||||||||||||||| |
|
|
| T |
30443047 |
tcatcttctttgttgtgctttgttgtatcaattttgttggcaatgctcaacataaatcttcgacgagtgtgatttctttgattaaa |
30442962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 30415183 - 30415129
Alignment:
| Q |
169 |
cgaaagagtgaaggtatgttaatgcattgaacatgagtgttgataaaactattat |
223 |
Q |
| |
|
||||||||||||| ||||||||| | ||||||||| |||| ||||||||||||| |
|
|
| T |
30415183 |
cgaaagagtgaagttatgttaatttagtgaacatgattgttaataaaactattat |
30415129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 168
Target Start/End: Complemental strand, 27655499 - 27655467
Alignment:
| Q |
136 |
aaatatctaacgagtgtgatttctttgattaaa |
168 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
|
|
| T |
27655499 |
aaatatctatcgagtgtgatttctttgattaaa |
27655467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 168
Target Start/End: Original strand, 30834260 - 30834292
Alignment:
| Q |
136 |
aaatatctaacgagtgtgatttctttgattaaa |
168 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
30834260 |
aaatctctaacgagtgtgatttctttgattaaa |
30834292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 73 - 168
Target Start/End: Original strand, 19592126 - 19592221
Alignment:
| Q |
73 |
ttatatttgttcatcttctttattgtgctttgctatatcaatctcgttggcaatgctcaatataaatatctaacgagtgtgatttctttgattaaa |
168 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||| |||||| | |||||||||||||||||||||||| |
|
|
| T |
19592126 |
ttatatttgttcatcttctttgttgtgctttgctatatcaattttgttggcaatgctcaacataaatcttcgacgagtgtgatttctttgattaaa |
19592221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University