View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10847_high_4 (Length: 227)

Name: NF10847_high_4
Description: NF10847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10847_high_4
NF10847_high_4
[»] chr5 (20 HSPs)
chr5 (1-212)||(33585085-33585284)
chr5 (168-212)||(34171163-34171207)
chr5 (171-212)||(28640084-28640125)
chr5 (168-212)||(4011746-4011790)
chr5 (168-212)||(4371362-4371406)
chr5 (168-212)||(27810345-27810389)
chr5 (168-212)||(31889741-31889785)
chr5 (168-212)||(36660426-36660470)
chr5 (168-211)||(12167693-12167736)
chr5 (175-212)||(33822613-33822650)
chr5 (168-212)||(166759-166803)
chr5 (168-212)||(793716-793760)
chr5 (168-212)||(7388291-7388335)
chr5 (168-212)||(7731703-7731747)
chr5 (168-212)||(14980149-14980193)
chr5 (172-212)||(15400174-15400214)
chr5 (168-212)||(28316712-28316756)
chr5 (168-212)||(31557445-31557489)
chr5 (168-212)||(38982255-38982299)
chr5 (168-212)||(42329656-42329700)
[»] chr7 (16 HSPs)
chr7 (168-212)||(3681033-3681077)
chr7 (168-212)||(28044242-28044286)
chr7 (171-212)||(40805026-40805067)
chr7 (168-212)||(18733452-18733496)
chr7 (168-212)||(18886668-18886712)
chr7 (168-212)||(22597229-22597273)
chr7 (168-212)||(31416862-31416906)
chr7 (168-212)||(40298846-40298890)
chr7 (168-212)||(41906044-41906088)
chr7 (175-212)||(5723009-5723046)
chr7 (171-212)||(19920382-19920423)
chr7 (175-212)||(42044090-42044127)
chr7 (168-212)||(36447712-36447756)
chr7 (168-212)||(36836058-36836102)
chr7 (168-212)||(43813455-43813499)
chr7 (168-212)||(48838776-48838820)
[»] chr4 (22 HSPs)
chr4 (168-212)||(31941553-31941597)
chr4 (168-212)||(47321139-47321183)
chr4 (171-212)||(45520570-45520611)
chr4 (168-212)||(6232147-6232191)
chr4 (168-212)||(6510113-6510157)
chr4 (168-212)||(21045151-21045195)
chr4 (168-212)||(35928486-35928530)
chr4 (168-212)||(50072276-50072320)
chr4 (168-212)||(52732594-52732638)
chr4 (175-212)||(28116247-28116284)
chr4 (175-212)||(45903518-45903555)
chr4 (168-212)||(1868211-1868255)
chr4 (168-212)||(15501258-15501302)
chr4 (168-212)||(19282523-19282567)
chr4 (168-212)||(29840070-29840114)
chr4 (184-212)||(30492739-30492767)
chr4 (168-212)||(34124290-34124334)
chr4 (168-212)||(37445655-37445699)
chr4 (168-212)||(38692409-38692453)
chr4 (176-212)||(44855245-44855281)
chr4 (168-212)||(55548336-55548380)
chr4 (168-212)||(56556366-56556410)
[»] chr3 (23 HSPs)
chr3 (168-212)||(19552539-19552583)
chr3 (168-212)||(43580474-43580518)
chr3 (171-212)||(1341030-1341071)
chr3 (171-212)||(45095555-45095596)
chr3 (168-212)||(2568113-2568157)
chr3 (168-212)||(3000751-3000795)
chr3 (168-212)||(15514836-15514880)
chr3 (168-212)||(26965609-26965653)
chr3 (168-212)||(32304015-32304059)
chr3 (168-212)||(34059875-34059919)
chr3 (168-212)||(36771677-36771721)
chr3 (168-212)||(44854314-44854358)
chr3 (168-212)||(46363121-46363165)
chr3 (168-212)||(51381720-51381764)
chr3 (168-211)||(44648512-44648555)
chr3 (175-212)||(25722571-25722608)
chr3 (175-212)||(43687996-43688033)
chr3 (168-212)||(83295-83339)
chr3 (168-212)||(790095-790139)
chr3 (168-212)||(25061703-25061747)
chr3 (168-212)||(37225705-37225749)
chr3 (168-212)||(50420258-50420302)
chr3 (168-212)||(54261414-54261458)
[»] chr8 (20 HSPs)
chr8 (169-212)||(30788934-30788977)
chr8 (171-212)||(8382588-8382629)
chr8 (175-212)||(32326836-32326873)
chr8 (168-212)||(1774170-1774214)
chr8 (168-212)||(2803348-2803392)
chr8 (168-212)||(7612496-7612540)
chr8 (168-212)||(11257540-11257584)
chr8 (168-212)||(29931342-29931386)
chr8 (168-212)||(36915365-36915409)
chr8 (168-212)||(38329140-38329184)
chr8 (168-212)||(45187395-45187439)
chr8 (168-211)||(3203325-3203368)
chr8 (170-212)||(3095614-3095656)
chr8 (175-212)||(16208955-16208992)
chr8 (135-212)||(32061534-32061611)
chr8 (175-212)||(34168316-34168353)
chr8 (184-212)||(8107270-8107298)
chr8 (168-212)||(9022393-9022437)
chr8 (168-212)||(22601134-22601178)
chr8 (168-212)||(42946120-42946164)
[»] chr2 (12 HSPs)
chr2 (171-212)||(14378334-14378375)
chr2 (168-209)||(45372645-45372686)
chr2 (168-212)||(33093366-33093410)
chr2 (168-212)||(34225771-34225815)
chr2 (168-212)||(45148062-45148106)
chr2 (170-212)||(7743401-7743443)
chr2 (171-212)||(4566233-4566274)
chr2 (171-212)||(42969900-42969941)
chr2 (168-212)||(4536572-4536616)
chr2 (168-212)||(24775187-24775231)
chr2 (168-212)||(29795300-29795344)
chr2 (168-212)||(41984416-41984460)
[»] chr1 (20 HSPs)
chr1 (135-212)||(84604-84681)
chr1 (175-212)||(43755058-43755095)
chr1 (168-212)||(11650056-11650100)
chr1 (168-212)||(24041111-24041155)
chr1 (168-212)||(26582923-26582967)
chr1 (175-212)||(40061007-40061044)
chr1 (168-209)||(43738367-43738408)
chr1 (175-212)||(44582890-44582927)
chr1 (175-212)||(50158417-50158454)
chr1 (168-212)||(5317687-5317731)
chr1 (168-212)||(6332164-6332208)
chr1 (168-212)||(9552440-9552484)
chr1 (168-212)||(12002244-12002288)
chr1 (168-212)||(15698861-15698905)
chr1 (184-212)||(28751518-28751546)
chr1 (168-212)||(38132278-38132322)
chr1 (171-211)||(43105692-43105732)
chr1 (168-212)||(44583770-44583814)
chr1 (168-212)||(48259964-48260008)
chr1 (168-212)||(48320100-48320144)
[»] scaffold0189 (1 HSPs)
scaffold0189 (168-212)||(13169-13213)
[»] chr6 (10 HSPs)
chr6 (168-212)||(1924774-1924818)
chr6 (168-212)||(4132085-4132129)
chr6 (168-212)||(30627089-30627133)
chr6 (168-212)||(32258720-32258764)
chr6 (175-212)||(3015921-3015958)
chr6 (168-212)||(4123965-4124009)
chr6 (168-212)||(29915539-29915583)
chr6 (168-212)||(29927205-29927249)
chr6 (168-212)||(30626867-30626911)
chr6 (168-212)||(31275752-31275796)
[»] scaffold0194 (1 HSPs)
scaffold0194 (168-212)||(8156-8200)
[»] scaffold0047 (1 HSPs)
scaffold0047 (168-212)||(70565-70609)
[»] scaffold0003 (1 HSPs)
scaffold0003 (168-212)||(321724-321768)


Alignment Details
Target: chr5 (Bit Score: 131; Significance: 4e-68; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 33585284 - 33585085
Alignment:
Q  1 tcaaggtgtgtgattgggaactaatgaagaatagtaatgtgaaatatctttgcataattaaaggaactagaattaatgaggaagagtacggttaaagtga 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33585284 tcaaggtgtgtgatggggaactaatgaagaatagtaatgtgaaatatctttgcataattaaaggaactagaattaatgaggaagagtacggttaaagtga 33585185  T
Q  101 atattgaatagtaattcatccgtttcaaattgaattttaaattgagtgtcactttagatnnnnnnnnttgttttaaaataaacgtcactttacattttca 200  Q
    ||||||||||||||| ||||||||||            ||| |||||||||||||||||        |||||||||||| ||||||||||||||||||||    
T  33585184 atattgaatagtaatccatccgtttc------------aaaatgagtgtcactttagataaaaaaaattgttttaaaatgaacgtcactttacattttca 33585097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 34171163 - 34171207
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||| || |||||||||||||||||||||||||||||    
T  34171163 ttgttttaaaatgaatgtcactttacattttcaatacaactttaa 34171207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 28640084 - 28640125
Alignment:
Q  171 ttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||| ||||||||||||||||||| |||||||||    
T  28640084 ttttaaaataaatgtcactttacattttcaattcaactttaa 28640125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 4011790 - 4011746
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||| ||||||||||||||||| | ||||||||||||    
T  4011790 ttgttttaaaatgaacgtcactttacatttccgatacaactttaa 4011746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 4371362 - 4371406
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||| ||||||||||||||||| ||||||||||||||    
T  4371362 ttgtttcaaaatgaacgtcactttacatttccaatacaactttaa 4371406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 27810345 - 27810389
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||| || |||||||||||||||||||||||||||||    
T  27810345 ttgtttcaaaatgaatgtcactttacattttcaatacaactttaa 27810389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 31889741 - 31889785
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| |||||||| |||||||||||||| ||||||||||||||    
T  31889741 ttgtttcaaaataaatgtcactttacatttccaatacaactttaa 31889785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 36660426 - 36660470
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||| || |||||||||||||||||||||||||||||    
T  36660426 ttgtttcaaaatgaatgtcactttacattttcaatacaactttaa 36660470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 12167736 - 12167693
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaacttta 211  Q
    |||||||||||| || |||||| |||||||||||||||||||||    
T  12167736 ttgttttaaaatgaatgtcactctacattttcaatacaacttta 12167693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 33822650 - 33822613
Alignment:
Q  175 aaaataaacgtcactttacattttcaatacaactttaa 212  Q
    ||||| || |||||||||||||||||||||||||||||    
T  33822650 aaaatgaatgtcactttacattttcaatacaactttaa 33822613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 166803 - 166759
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||| || |||||||||||||| ||||||||||||||    
T  166803 ttgtttcaaaatgaatgtcactttacatttccaatacaactttaa 166759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 793760 - 793716
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||| || |||||||||||||| ||||||||||||||    
T  793760 ttgtttcaaaatgaatgtcactttacatttccaatacaactttaa 793716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 7388335 - 7388291
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||| || ||||||||| ||||||||||||| |||||    
T  7388335 ttgttttaaaatgaatgtcactttatattttcaatacaattttaa 7388291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 7731747 - 7731703
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||| || ||||||||| |||||||| ||||||||||    
T  7731747 ttgttttaaaatgaatgtcactttatattttcaaaacaactttaa 7731703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 14980193 - 14980149
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||| || |||||||||||||| ||||||||||||||    
T  14980193 ttgtttcaaaatgaatgtcactttacatttccaatacaactttaa 14980149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 15400174 - 15400214
Alignment:
Q  172 tttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||| || |||||||||||||| ||||||||||||||    
T  15400174 tttaaaatgaatgtcactttacatttccaatacaactttaa 15400214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 28316712 - 28316756
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| |||||||| |||| |||| |||||||||||||||||||    
T  28316712 ttgtttcaaaataaatgtcattttatattttcaatacaactttaa 28316756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 31557489 - 31557445
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||| || |||| ||||||||||||||||||||||||    
T  31557489 ttgtttcaaaatgaatgtcattttacattttcaatacaactttaa 31557445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 38982299 - 38982255
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||| || ||||||||| |||| ||||||||||||||    
T  38982299 ttgttttaaaatgaatgtcactttatatttccaatacaactttaa 38982255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 42329700 - 42329656
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||| || |||||||||||||| ||||||||||||||    
T  42329700 ttgtttcaaaatgaatgtcactttacatttccaatacaactttaa 42329656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 3681077 - 3681033
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||| || |||||||||||||||||||||||||||||    
T  3681077 ttgttttaaaatgaatgtcactttacattttcaatacaactttaa 3681033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 28044286 - 28044242
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||| || |||||||||||||||||||||||||||||    
T  28044286 ttgttttaaaatgaatgtcactttacattttcaatacaactttaa 28044242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 40805026 - 40805067
Alignment:
Q  171 ttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||| |||||||||||||| ||||||||||||||    
T  40805026 ttttaaaataaatgtcactttacatttacaatacaactttaa 40805067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 18733452 - 18733496
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||| || |||||||||||||||||||||||||||||    
T  18733452 ttgtttcaaaatgaatgtcactttacattttcaatacaactttaa 18733496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 18886668 - 18886712
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||| ||  ||||||||||||||||||||||||||||    
T  18886668 ttgttttaaaatgaatctcactttacattttcaatacaactttaa 18886712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 22597229 - 22597273
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||| || |||||||||||||||||||||||||||||    
T  22597229 ttgtttcaaaatgaatgtcactttacattttcaatacaactttaa 22597273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 31416906 - 31416862
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||| ||  ||||||||||||||||||||||||||||    
T  31416906 ttgttttaaaatgaatatcactttacattttcaatacaactttaa 31416862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 40298846 - 40298890
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||| || |||||||||||||||||||||||||||||    
T  40298846 ttgtttcaaaatgaatgtcactttacattttcaatacaactttaa 40298890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 41906088 - 41906044
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    ||||||||||||||| ||||||||||||||  |||||||||||||    
T  41906088 ttgttttaaaataaatgtcactttacatttctaatacaactttaa 41906044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 5723009 - 5723046
Alignment:
Q  175 aaaataaacgtcactttacattttcaatacaactttaa 212  Q
    ||||| || |||||||||||||||||||||||||||||    
T  5723009 aaaatgaatgtcactttacattttcaatacaactttaa 5723046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 19920423 - 19920382
Alignment:
Q  171 ttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    ||||||||| || |||||||||||||| ||||||||||||||    
T  19920423 ttttaaaatgaatgtcactttacatttccaatacaactttaa 19920382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 42044127 - 42044090
Alignment:
Q  175 aaaataaacgtcactttacattttcaatacaactttaa 212  Q
    ||||| || |||||||||||||||||||||||||||||    
T  42044127 aaaattaatgtcactttacattttcaatacaactttaa 42044090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 36447756 - 36447712
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||| ||  |||||||| |||||||||||||||||||    
T  36447756 ttgttttaaaatgaatatcactttatattttcaatacaactttaa 36447712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 36836058 - 36836102
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||| || ||| |||||||||||||||||||||||||    
T  36836058 ttgtttcaaaatgaatgtcgctttacattttcaatacaactttaa 36836102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 43813499 - 43813455
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||| || ||||||||| |||| ||||||||||||||    
T  43813499 ttgttttaaaatgaatgtcactttatatttccaatacaactttaa 43813455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 48838820 - 48838776
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    ||||||||||||||| |||| |||| |||||||||| ||||||||    
T  48838820 ttgttttaaaataaatgtcaatttatattttcaatataactttaa 48838776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 31941553 - 31941597
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||| || |||||||||||||||||||||||||||||    
T  31941553 ttgttttaaaatgaatgtcactttacattttcaatacaactttaa 31941597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 47321139 - 47321183
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||| || |||||||||||||||||||||||||||||    
T  47321139 ttgttttaaaatgaatgtcactttacattttcaatacaactttaa 47321183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 45520611 - 45520570
Alignment:
Q  171 ttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    ||||||||| || |||||||||||||||||||||||||||||    
T  45520611 ttttaaaatgaatgtcactttacattttcaatacaactttaa 45520570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 6232191 - 6232147
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| |||||||| |||| ||||||||||||||||||||||||    
T  6232191 ttgtttcaaaataaatgtcaatttacattttcaatacaactttaa 6232147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 6510113 - 6510157
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| |||||||| ||||||||| |||||||||||||||||||    
T  6510113 ttgtttcaaaataaatgtcactttatattttcaatacaactttaa 6510157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 21045151 - 21045195
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||| || |||||||||||||||||||||||||||||    
T  21045151 ttgtttcaaaatgaatgtcactttacattttcaatacaactttaa 21045195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 35928486 - 35928530
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||||||  ||||||||||||||||||||||||||||    
T  35928486 ttgtttcaaaataaatatcactttacattttcaatacaactttaa 35928530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 50072276 - 50072320
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||| || |||||||||||||||||||||||||||||    
T  50072276 ttgtttcaaaatgaatgtcactttacattttcaatacaactttaa 50072320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 52732594 - 52732638
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||| || |||||||||||||| ||||||||||||||    
T  52732594 ttgttttaaaatgaatgtcactttacatttccaatacaactttaa 52732638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 28116247 - 28116284
Alignment:
Q  175 aaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  28116247 aaaataaatgtcactttacatttccaatacaactttaa 28116284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 45903555 - 45903518
Alignment:
Q  175 aaaataaacgtcactttacattttcaatacaactttaa 212  Q
    ||||| || |||||||||||||||||||||||||||||    
T  45903555 aaaatgaatgtcactttacattttcaatacaactttaa 45903518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 1868255 - 1868211
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||| || ||||||||||||||||||| |||||||||    
T  1868255 ttgtttcaaaatgaatgtcactttacattttcaatgcaactttaa 1868211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 15501302 - 15501258
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||| || |||||||||||||| ||||||||||||||    
T  15501302 ttgtttgaaaatgaatgtcactttacatttccaatacaactttaa 15501258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 19282567 - 19282523
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||| || |||||||||||||| ||||||||||||||    
T  19282567 ttgtttcaaaatgaatgtcactttacatttccaatacaactttaa 19282523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 29840070 - 29840114
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||| || |||||||||||||| ||||||||||||||    
T  29840070 ttgtttcaaaatgaatgtcactttacatttccaatacaactttaa 29840114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 212
Target Start/End: Original strand, 30492739 - 30492767
Alignment:
Q  184 gtcactttacattttcaatacaactttaa 212  Q
    |||||||||||||||||||||||||||||    
T  30492739 gtcactttacattttcaatacaactttaa 30492767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 34124290 - 34124334
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||| || ||| ||||||||||||||| |||||||||    
T  34124290 ttgttttaaaatgaatgtcgctttacattttcaatgcaactttaa 34124334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 37445655 - 37445699
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||| || |||| |||||||||| |||||||||||||    
T  37445655 ttgttttaaaatgaatgtcattttacatttttaatacaactttaa 37445699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 38692409 - 38692453
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||| || |||||||||||||||||||  ||||||||    
T  38692409 ttgttttaaaatgaatgtcactttacattttcaattaaactttaa 38692453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 44855245 - 44855281
Alignment:
Q  176 aaataaacgtcactttacattttcaatacaactttaa 212  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  44855245 aaataaatgtcactttacatttccaatacaactttaa 44855281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 55548380 - 55548336
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| |||||||  ||||||||||||||||||| |||||||||    
T  55548380 ttgtttcaaaataagtgtcactttacattttcaatgcaactttaa 55548336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 56556410 - 56556366
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||| || |||||||||||||| ||||||||||||||    
T  56556410 ttgtttcaaaatgaatgtcactttacatttccaatacaactttaa 56556366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 19552539 - 19552583
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||| || |||||||||||||||||||||||||||||    
T  19552539 ttgttttaaaatgaatgtcactttacattttcaatacaactttaa 19552583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 43580474 - 43580518
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| |||||||| |||||||||||||||||||||||||||||    
T  43580474 ttgtttcaaaataaatgtcactttacattttcaatacaactttaa 43580518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 1341071 - 1341030
Alignment:
Q  171 ttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    ||||||||| || |||||||||||||||||||||||||||||    
T  1341071 ttttaaaatgaatgtcactttacattttcaatacaactttaa 1341030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 45095555 - 45095596
Alignment:
Q  171 ttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    ||||||||| || |||||||||||||||||||||||||||||    
T  45095555 ttttaaaatgaatgtcactttacattttcaatacaactttaa 45095596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 2568157 - 2568113
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||| || || ||||||||||||||||||||||||||    
T  2568157 ttgttttaaaatgaatgttactttacattttcaatacaactttaa 2568113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 3000751 - 3000795
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||| || || ||||||||||||||||||||||||||    
T  3000751 ttgttttaaaatgaatgttactttacattttcaatacaactttaa 3000795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 15514880 - 15514836
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    ||||||| ||||||| |||||||||||||| ||||||||||||||    
T  15514880 ttgttttcaaataaatgtcactttacatttccaatacaactttaa 15514836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 26965653 - 26965609
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||| || |||||||||||||||||||||||||||||    
T  26965653 ttgtttcaaaatgaatgtcactttacattttcaatacaactttaa 26965609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 32304059 - 32304015
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    ||||||| |||| || |||||||||||||||||||||||||||||    
T  32304059 ttgttttgaaatgaatgtcactttacattttcaatacaactttaa 32304015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 34059875 - 34059919
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||| || |||| ||||||||||||||||||||||||    
T  34059875 ttgttttaaaatgaatgtcattttacattttcaatacaactttaa 34059919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 36771721 - 36771677
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||| || |||||||||||||| ||||||||||||||    
T  36771721 ttgttttaaaatgaatgtcactttacatttacaatacaactttaa 36771677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 44854314 - 44854358
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||| |||||||||||||||||||||||||| |||||    
T  44854314 ttgtttcaaaatgaacgtcactttacattttcaatacaattttaa 44854358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 46363165 - 46363121
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||| || |||||||||||||||||||||||||||||    
T  46363165 ttgtttcaaaatgaatgtcactttacattttcaatacaactttaa 46363121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 51381720 - 51381764
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| |||||||| |||||||||||||| ||||||||||||||    
T  51381720 ttgtttcaaaataaatgtcactttacatttacaatacaactttaa 51381764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 44648555 - 44648512
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaacttta 211  Q
    |||||||||||| || |||||||||||||| |||||||||||||    
T  44648555 ttgttttaaaatgaatgtcactttacatttccaatacaacttta 44648512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 25722608 - 25722571
Alignment:
Q  175 aaaataaacgtcactttacattttcaatacaactttaa 212  Q
    ||||| || |||||||||||||||||||||||||||||    
T  25722608 aaaatgaatgtcactttacattttcaatacaactttaa 25722571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 43688033 - 43687996
Alignment:
Q  175 aaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  43688033 aaaataaatgtcactttacatttccaatacaactttaa 43687996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 83295 - 83339
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||| || |||| ||||||||||||||||||||||||    
T  83295 ttgtttcaaaatgaatgtcattttacattttcaatacaactttaa 83339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 790095 - 790139
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||| || |||||||||||||| ||||||||||||||    
T  790095 ttgtttcaaaattaatgtcactttacatttccaatacaactttaa 790139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 25061703 - 25061747
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||| || | |||||||||||| ||||||||||||||    
T  25061703 ttgttttaaaatgaatgccactttacatttccaatacaactttaa 25061747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 37225749 - 37225705
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||| || |||||||||||||| ||||||||||||||    
T  37225749 ttgtttcaaaatgaatgtcactttacatttccaatacaactttaa 37225705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 50420258 - 50420302
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| |||||||| |||| |||||||||| |||||||||||||    
T  50420258 ttgtttaaaaataaatgtcattttacatttttaatacaactttaa 50420302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 54261414 - 54261458
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||| |||||| ||||||||||||||| |||||||||    
T  54261414 ttgtttcaaaatgaacgtcgctttacattttcaatgcaactttaa 54261458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 30788934 - 30788977
Alignment:
Q  169 tgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||||| |||||||||||| ||||||||||||||||    
T  30788934 tgttttaaaataaatgtcactttacatattcaatacaactttaa 30788977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 8382629 - 8382588
Alignment:
Q  171 ttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    ||||||||| || |||||||||||||||||||||||||||||    
T  8382629 ttttaaaatgaatgtcactttacattttcaatacaactttaa 8382588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 32326873 - 32326836
Alignment:
Q  175 aaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||| |||||||||||||||||||||||||||||    
T  32326873 aaaataaatgtcactttacattttcaatacaactttaa 32326836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 1774214 - 1774170
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||| || |||| ||||||||||||||||||||||||    
T  1774214 ttgttttaaaatgaatgtcaatttacattttcaatacaactttaa 1774170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 2803392 - 2803348
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| |||||||| ||||||||||||||||||||||| |||||    
T  2803392 ttgtttcaaaataaatgtcactttacattttcaatacaattttaa 2803348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 7612496 - 7612540
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||| || |||||||||||||||||||||||| ||||    
T  7612496 ttgttttaaaatgaatgtcactttacattttcaatacaacattaa 7612540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 11257540 - 11257584
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||| || ||||||||||||||| |||||||||||||    
T  11257540 ttgttttaaaatgaatgtcactttacatttttaatacaactttaa 11257584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 29931386 - 29931342
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||||||  ||||||||||||| ||||||||||||||    
T  29931386 ttgttttaaaataaatatcactttacatttccaatacaactttaa 29931342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 36915365 - 36915409
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||| || |||||||||||||||||||||||||||||    
T  36915365 ttgtttcaaaatgaatgtcactttacattttcaatacaactttaa 36915409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 38329184 - 38329140
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||| || ||||||||| |||||||||||||||||||    
T  38329184 ttgttttaaaatgaatgtcactttatattttcaatacaactttaa 38329140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 45187439 - 45187395
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| |||||||| ||||||||| |||||||||||||||||||    
T  45187439 ttgtttcaaaataaatgtcactttatattttcaatacaactttaa 45187395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 211
Target Start/End: Original strand, 3203325 - 3203368
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaacttta 211  Q
    |||||| |||||||| ||||||||||||||||||| ||||||||    
T  3203325 ttgtttcaaaataaatgtcactttacattttcaatgcaacttta 3203368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 212
Target Start/End: Complemental strand, 3095656 - 3095614
Alignment:
Q  170 gttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||| || || ||||||||||||||||||||||||||    
T  3095656 gttttaaaatgaatgttactttacattttcaatacaactttaa 3095614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 16208955 - 16208992
Alignment:
Q  175 aaaataaacgtcactttacattttcaatacaactttaa 212  Q
    ||||| || |||||||||||||||||||||||||||||    
T  16208955 aaaatgaatgtcactttacattttcaatacaactttaa 16208992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 212
Target Start/End: Complemental strand, 32061611 - 32061534
Alignment:
Q  135 ttttaaattgagtgtcactttagatnnnnnnnnttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    ||||||| |||||||||||||| ||        |||||||||||| || |||||||||||||||| |||||| |||||    
T  32061611 ttttaaaatgagtgtcactttaaataaaaaaaattgttttaaaatgaatgtcactttacattttctatacaaatttaa 32061534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 34168353 - 34168316
Alignment:
Q  175 aaaataaacgtcactttacattttcaatacaactttaa 212  Q
    ||||| || |||||||||||||||||||||||||||||    
T  34168353 aaaatgaatgtcactttacattttcaatacaactttaa 34168316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 212
Target Start/End: Complemental strand, 8107298 - 8107270
Alignment:
Q  184 gtcactttacattttcaatacaactttaa 212  Q
    |||||||||||||||||||||||||||||    
T  8107298 gtcactttacattttcaatacaactttaa 8107270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 9022393 - 9022437
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||| || |||||||||| ||| ||||||||||||||    
T  9022393 ttgttttaaaatgaatgtcactttacgtttccaatacaactttaa 9022437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 22601134 - 22601178
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||| || |||||||||||||| ||||||||||||||    
T  22601134 ttgtttcaaaatgaatgtcactttacatttccaatacaactttaa 22601178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 42946120 - 42946164
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||| || |||| |||||||||| |||||||||||||    
T  42946120 ttgttttaaaatgaatgtcattttacatttttaatacaactttaa 42946164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 14378375 - 14378334
Alignment:
Q  171 ttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    ||||||||| || |||||||||||||||||||||||||||||    
T  14378375 ttttaaaatgaatgtcactttacattttcaatacaactttaa 14378334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 209
Target Start/End: Complemental strand, 45372686 - 45372645
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactt 209  Q
    |||||||||||| || ||||||||||||||||||||||||||    
T  45372686 ttgttttaaaatgaatgtcactttacattttcaatacaactt 45372645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 33093366 - 33093410
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||| || |||||||||||||||||||||||||||||    
T  33093366 ttgtttcaaaatgaatgtcactttacattttcaatacaactttaa 33093410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 34225771 - 34225815
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||| || |||||||||||||||||||||||||||||    
T  34225771 ttgtttcaaaatgaatgtcactttacattttcaatacaactttaa 34225815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 45148106 - 45148062
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||| || |||||||||||||||||||| ||||||||    
T  45148106 ttgttttaaaatgaatgtcactttacattttcaataaaactttaa 45148062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 212
Target Start/End: Original strand, 7743401 - 7743443
Alignment:
Q  170 gttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||| || |||||||||||||| ||||||||||||||    
T  7743401 gttttaaaatgaatgtcactttacatttccaatacaactttaa 7743443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 4566274 - 4566233
Alignment:
Q  171 ttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||| | ||||||||||||||| |||||||||||||    
T  4566274 ttttaaaatatatgtcactttacatttttaatacaactttaa 4566233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 42969900 - 42969941
Alignment:
Q  171 ttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||| ||||||||||||||| ||||| |||||||    
T  42969900 ttttaaaataaatgtcactttacatttttaataccactttaa 42969941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 4536572 - 4536616
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||| || |||||||||||||| ||||||||||||||    
T  4536572 ttgtttcaaaatgaatgtcactttacatttccaatacaactttaa 4536616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 24775187 - 24775231
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||| |  ||||||||||||||||||||||| |||||    
T  24775187 ttgttttaaaatgattgtcactttacattttcaatacaattttaa 24775231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 29795344 - 29795300
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||| || |||||||||||||| ||||||||||||||    
T  29795344 ttgtttcaaaatgaatgtcactttacatttccaatacaactttaa 29795300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 41984416 - 41984460
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||||||  || |||||||||||||||||||||||||    
T  41984416 ttgtttcaaaataaatatcgctttacattttcaatacaactttaa 41984460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 212
Target Start/End: Complemental strand, 84681 - 84604
Alignment:
Q  135 ttttaaattgagtgtcactttagatnnnnnnnnttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||||||||||||||          |||||||||||| || |||||||||||||| ||||||||||||||    
T  84681 ttttaaattgagtgtcactttagcaaaaaaaaattgttttaaaatgaatgtcactttacatttccaatacaactttaa 84604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 43755058 - 43755095
Alignment:
Q  175 aaaataaacgtcactttacattttcaatacaactttaa 212  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  43755058 aaaatgaacgtcactttacattttcaatacaactttaa 43755095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 11650056 - 11650100
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||| || |||||||||||||||||||||||||||||    
T  11650056 ttgtttcaaaatgaatgtcactttacattttcaatacaactttaa 11650100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 24041155 - 24041111
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||| || |||||||||||||||||||||||||||||    
T  24041155 ttgtttcaaaatgaatgtcactttacattttcaatacaactttaa 24041111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 26582923 - 26582967
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    ||||||||||||||| || ||||||||||| ||||||||||||||    
T  26582923 ttgttttaaaataaatgttactttacatttccaatacaactttaa 26582967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 40061044 - 40061007
Alignment:
Q  175 aaaataaacgtcactttacattttcaatacaactttaa 212  Q
    ||||| || |||||||||||||||||||||||||||||    
T  40061044 aaaatgaatgtcactttacattttcaatacaactttaa 40061007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 209
Target Start/End: Complemental strand, 43738408 - 43738367
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactt 209  Q
    |||||||||||| || ||||||| ||||||||||||||||||    
T  43738408 ttgttttaaaatgaatgtcacttcacattttcaatacaactt 43738367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 44582927 - 44582890
Alignment:
Q  175 aaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  44582927 aaaataaatgtcactttacatttccaatacaactttaa 44582890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 50158454 - 50158417
Alignment:
Q  175 aaaataaacgtcactttacattttcaatacaactttaa 212  Q
    ||||| || |||||||||||||||||||||||||||||    
T  50158454 aaaatgaatgtcactttacattttcaatacaactttaa 50158417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 5317731 - 5317687
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||| || ||||||||||| |||||||||||||||||    
T  5317731 ttgtttcaaaatgaatgtcactttacaatttcaatacaactttaa 5317687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 6332164 - 6332208
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||| || ||||||||||||||| || ||||||||||    
T  6332164 ttgttttaaaatgaatgtcactttacatttttaacacaactttaa 6332208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 9552484 - 9552440
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||| || |||| ||||||||| ||||||||||||||    
T  9552484 ttgttttaaaatgaatgtcattttacatttccaatacaactttaa 9552440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 12002244 - 12002288
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||| || |||| ||||||||| ||||||||||||||    
T  12002244 ttgttttaaaatgaatgtcattttacatttccaatacaactttaa 12002288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 15698905 - 15698861
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||| || ||||||||| |||| ||||||||||||||    
T  15698905 ttgttttaaaatgaatgtcactttatatttccaatacaactttaa 15698861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 212
Target Start/End: Complemental strand, 28751546 - 28751518
Alignment:
Q  184 gtcactttacattttcaatacaactttaa 212  Q
    |||||||||||||||||||||||||||||    
T  28751546 gtcactttacattttcaatacaactttaa 28751518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 38132322 - 38132278
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||| || |||||||||||||| ||||||||||||||    
T  38132322 ttgtttcaaaatgaatgtcactttacatttccaatacaactttaa 38132278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 43105732 - 43105692
Alignment:
Q  171 ttttaaaataaacgtcactttacattttcaatacaacttta 211  Q
    ||||||||| || ||||| ||||||||||||||||||||||    
T  43105732 ttttaaaatgaatgtcaccttacattttcaatacaacttta 43105692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 44583770 - 44583814
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||| || ||||| ||||||||| |||||||||||||    
T  44583770 ttgttttaaaatgaatgtcaccttacatttttaatacaactttaa 44583814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 48260008 - 48259964
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||| || |||||||||||||| ||||||||||||||    
T  48260008 ttgtttcaaaatgaatgtcactttacatttccaatacaactttaa 48259964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 48320144 - 48320100
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    ||||||||||||||| || |||||| ||||||||||||| |||||    
T  48320144 ttgttttaaaataaatgttactttatattttcaatacaaatttaa 48320100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 13213 - 13169
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||| ||||||||||||||||| |||||||| |||||    
T  13213 ttgttttaaaatgaacgtcactttacatttccaatacaattttaa 13169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 1924818 - 1924774
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||| || |||| ||||||||||||||||||||||||    
T  1924818 ttgttttaaaatgaatgtcattttacattttcaatacaactttaa 1924774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 4132129 - 4132085
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||| || ||||||||||||||| |||||||||||||    
T  4132129 ttgttttaaaatgaatgtcactttacatttttaatacaactttaa 4132085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 30627089 - 30627133
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| |||||||| ||||||||| |||||||||||||||||||    
T  30627089 ttgtttcaaaataaatgtcactttatattttcaatacaactttaa 30627133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 32258720 - 32258764
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||| || |||||||||||||||||||||||||||||    
T  32258720 ttgtttcaaaatgaatgtcactttacattttcaatacaactttaa 32258764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 3015921 - 3015958
Alignment:
Q  175 aaaataaacgtcactttacattttcaatacaactttaa 212  Q
    ||||| || |||||||||||||||||||||||||||||    
T  3015921 aaaatgaatgtcactttacattttcaatacaactttaa 3015958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 4124009 - 4123965
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||| || ||||||||||||||| |||||||||||||    
T  4124009 ttgtttcaaaatgaatgtcactttacatttttaatacaactttaa 4123965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 29915539 - 29915583
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||| || |||||||||||||| ||||||||||||||    
T  29915539 ttgtttcaaaatgaatgtcactttacatttccaatacaactttaa 29915583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 29927205 - 29927249
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||| || |||||||||||||| ||||||||||||||    
T  29927205 ttgtttcaaaatgaatgtcactttacatttccaatacaactttaa 29927249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 30626867 - 30626911
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||||||  | ||||||||||||||||||||||||||    
T  30626867 ttgtttcaaaataaatattactttacattttcaatacaactttaa 30626911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 31275796 - 31275752
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||| || |||||||||||||| ||||||||||||||    
T  31275796 ttgtttcaaaatgaatgtcactttacatttccaatacaactttaa 31275752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 8156 - 8200
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||| || |||| ||||||||||||||||||||||||    
T  8156 ttgtttcaaaatgaatgtcaatttacattttcaatacaactttaa 8200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 70609 - 70565
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||| ||||| || ||||||||||||||||||| |||||||||    
T  70609 ttgtttcaaaatgaatgtcactttacattttcaatgcaactttaa 70565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 321724 - 321768
Alignment:
Q  168 ttgttttaaaataaacgtcactttacattttcaatacaactttaa 212  Q
    |||||||||||| || ||| |||||||||| ||||||||||||||    
T  321724 ttgttttaaaatgaatgtcgctttacatttccaatacaactttaa 321768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University