View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10847_low_2 (Length: 299)
Name: NF10847_low_2
Description: NF10847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10847_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 53240841 - 53241023
Alignment:
| Q |
1 |
tgccaataataaaggggttcatctagttggctggnnnnnnntagctaaacctaaacatctaggaggtttgggtttaagagcagccagggcggtaaatatt |
100 |
Q |
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| T |
53240841 |
tgccaataataaaggggttcatctagttggttggaaaaaaatagctaaacctaagcatctaggagggttgagtttaagagcagccagggaggtaaatact |
53240940 |
T |
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| Q |
101 |
tgtcttctaggggaagttggtttgagatttaactcaaaggaataataagctttgggtcaatattcttgcgaatagatattcagc |
184 |
Q |
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| T |
53240941 |
tgtcttttaggg-aagttggtttgggatttaactcaaagaaatattaagctttgggtcaatattcttgcgaataaatattcagc |
53241023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 42 - 183
Target Start/End: Complemental strand, 46783897 - 46783757
Alignment:
| Q |
42 |
tagctaaacctaaacatctaggaggtttgggtttaagagcagccagggcggtaaatatttgtcttctaggggaagttggtttgagatttaactcaaagga |
141 |
Q |
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| T |
46783897 |
tagctaaacataagcatctaggaggtttgggtttaagagcagccagggaggtaaatacttgtcttctaggg-aagttggtttgggatttaactcaaagaa |
46783799 |
T |
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| Q |
142 |
ataataagctttgggtcaatattcttgcgaatagatattcag |
183 |
Q |
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| T |
46783798 |
ataataagctttgggtcaatattcttgcgaataaatattcag |
46783757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 185 - 294
Target Start/End: Complemental strand, 8261209 - 8261100
Alignment:
| Q |
185 |
ggacctactaatatttgatctctcttctcaatttctgttgtgttccaaactaaagaaataattatccctcttcaatctctctcgtccctaactctgtctt |
284 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||| |||| |
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| T |
8261209 |
ggacccactaatatttgatctctcttctcaatttctgttgtgttccaaactaaagaaatgcctgtttctcttcaatctctctcgtccctaactctctctt |
8261110 |
T |
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| Q |
285 |
ccatttttct |
294 |
Q |
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| T |
8261109 |
tcctttttct |
8261100 |
T |
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