View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10848_high_1 (Length: 397)

Name: NF10848_high_1
Description: NF10848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10848_high_1
NF10848_high_1
[»] chr2 (10 HSPs)
chr2 (10-236)||(43796749-43796975)
chr2 (236-382)||(43797039-43797185)
chr2 (171-233)||(12238527-12238589)
chr2 (171-212)||(17317159-17317200)
chr2 (193-232)||(32522090-32522129)
chr2 (193-236)||(40301354-40301397)
chr2 (173-236)||(42839361-42839424)
chr2 (195-236)||(32366154-32366195)
chr2 (164-204)||(2401708-2401748)
chr2 (165-213)||(12223971-12224019)
[»] scaffold0004 (1 HSPs)
scaffold0004 (173-236)||(227688-227751)
[»] chr8 (27 HSPs)
chr8 (172-231)||(9781196-9781255)
chr8 (172-236)||(28280690-28280754)
chr8 (170-236)||(1184762-1184828)
chr8 (173-236)||(2669630-2669693)
chr8 (172-233)||(34286607-34286668)
chr8 (172-236)||(31079207-31079271)
chr8 (171-233)||(28879038-28879100)
chr8 (171-209)||(35168361-35168399)
chr8 (196-236)||(2563363-2563403)
chr8 (172-204)||(14942391-14942423)
chr8 (173-237)||(35453392-35453456)
chr8 (177-236)||(402129-402188)
chr8 (193-232)||(30973991-30974030)
chr8 (193-236)||(42102109-42102152)
chr8 (193-236)||(42363357-42363400)
chr8 (170-204)||(2563323-2563357)
chr8 (171-208)||(18396916-18396953)
chr8 (171-200)||(30973955-30973984)
chr8 (196-236)||(218293-218333)
chr8 (196-236)||(694853-694893)
chr8 (196-236)||(699062-699102)
chr8 (196-236)||(731916-731956)
chr8 (196-236)||(855812-855852)
chr8 (196-236)||(11988202-11988242)
chr8 (196-232)||(19925433-19925469)
chr8 (196-232)||(37410957-37410993)
chr8 (196-232)||(43577226-43577262)
[»] chr3 (13 HSPs)
chr3 (172-232)||(38524069-38524129)
chr3 (173-233)||(37601071-37601131)
chr3 (172-233)||(43376678-43376737)
chr3 (171-211)||(45331361-45331401)
chr3 (193-232)||(3645305-3645344)
chr3 (193-232)||(20894505-20894544)
chr3 (193-232)||(29614196-29614235)
chr3 (171-200)||(2086782-2086811)
chr3 (195-236)||(4257342-4257383)
chr3 (171-200)||(4974277-4974306)
chr3 (171-228)||(19307817-19307874)
chr3 (171-236)||(45049415-45049480)
chr3 (172-212)||(29270472-29270512)
[»] scaffold0091 (1 HSPs)
scaffold0091 (165-232)||(2624-2691)
[»] chr4 (19 HSPs)
chr4 (167-234)||(22397348-22397415)
chr4 (178-233)||(43983426-43983481)
chr4 (171-233)||(7148752-7148814)
chr4 (171-232)||(2141621-2141682)
chr4 (172-233)||(26206398-26206459)
chr4 (163-227)||(48591474-48591538)
chr4 (171-231)||(54412093-54412153)
chr4 (193-236)||(2702756-2702799)
chr4 (193-232)||(15184549-15184588)
chr4 (178-221)||(55852998-55853041)
chr4 (195-233)||(52700588-52700626)
chr4 (195-236)||(9201655-9201696)
chr4 (171-212)||(9319170-9319211)
chr4 (172-233)||(52274164-52274225)
chr4 (172-212)||(825663-825703)
chr4 (172-200)||(2702806-2702834)
chr4 (171-227)||(28663408-28663464)
chr4 (200-236)||(35010220-35010256)
chr4 (172-232)||(43136662-43136722)
[»] chr1 (18 HSPs)
chr1 (162-236)||(8410120-8410194)
chr1 (177-233)||(6337800-6337856)
chr1 (173-233)||(48819281-48819341)
chr1 (193-236)||(15235201-15235244)
chr1 (193-236)||(15791386-15791429)
chr1 (166-228)||(28870199-28870261)
chr1 (202-236)||(29333428-29333462)
chr1 (193-234)||(37148136-37148177)
chr1 (193-234)||(37156961-37157002)
chr1 (193-236)||(22088452-22088495)
chr1 (193-236)||(32497312-32497355)
chr1 (193-236)||(51162271-51162314)
chr1 (170-212)||(37431145-37431187)
chr1 (195-236)||(41003391-41003432)
chr1 (196-236)||(32810875-32810915)
chr1 (177-213)||(38781059-38781095)
chr1 (172-212)||(45267446-45267486)
chr1 (173-236)||(51409748-51409811)
[»] chr6 (6 HSPs)
chr6 (171-236)||(2034270-2034335)
chr6 (171-232)||(32165305-32165366)
chr6 (171-202)||(8011135-8011166)
chr6 (193-236)||(10184370-10184413)
chr6 (172-233)||(10755324-10755385)
chr6 (160-204)||(17914901-17914945)
[»] chr5 (11 HSPs)
chr5 (171-233)||(40696981-40697043)
chr5 (171-226)||(1942990-1943045)
chr5 (193-236)||(15413994-15414037)
chr5 (173-236)||(38461323-38461386)
chr5 (171-233)||(42706776-42706838)
chr5 (172-236)||(28357333-28357397)
chr5 (193-232)||(5203478-5203517)
chr5 (193-236)||(25332279-25332322)
chr5 (193-236)||(33757090-33757133)
chr5 (172-233)||(41534604-41534665)
chr5 (196-236)||(26003002-26003042)
[»] chr7 (12 HSPs)
chr7 (172-233)||(47511024-47511085)
chr7 (172-236)||(29378626-29378690)
chr7 (193-236)||(24371447-24371490)
chr7 (172-233)||(43818923-43818982)
chr7 (195-232)||(18260890-18260927)
chr7 (193-242)||(21027548-21027597)
chr7 (172-233)||(30094775-30094836)
chr7 (195-233)||(35809094-35809132)
chr7 (194-236)||(42083458-42083500)
chr7 (172-230)||(46743931-46743989)
chr7 (172-204)||(22032729-22032761)
chr7 (171-199)||(35809056-35809084)


Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 236
Target Start/End: Original strand, 43796749 - 43796975
Alignment:
Q  10 aagaacttttgtgttggtgaatcatcatcaaatgggaatggcaagaatgagcttggtggtgatagaaacagcagtgataagcaactaaagaaaggaaaag 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43796749 aagaacttttgtgttggtgaatcatcatcaaatgggaatggcaagaatgagcttggtggtgatagaaacagcagtgataagcaactaaagaaaggaaaag 43796848  T
Q  110 gtttatttgatttgaatgagtcgtatgttatagaggactaagcaagttgtagttaaggggtcgtttggattggcttattttagagcttatgtaaataaat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43796849 gtttatttgatttgaatgagtcgtatgttatagaggactaagcaagttgtagttaaggggtcgtttggattggcttattttagagcttatgtaaataaat 43796948  T
Q  210 aagtattaatgtattatttataagttt 236  Q
    |||||||||||||||||||||||||||    
T  43796949 aagtattaatgtattatttataagttt 43796975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 236 - 382
Target Start/End: Original strand, 43797039 - 43797185
Alignment:
Q  236 tagtaagctcaaaattgactcaatccaaacaggccgaggtggtaatgcaatatattatttgcatgctttctgctttttattacattataatctatattaa 335  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43797039 tagtaagctcaaaatagactcaatccaaacaggcccaggtggtaatgcaatatattatttgcatgctttctgctttttattacattataatctatattaa 43797138  T
Q  336 tttttacatttgttcagttgttgatgttttatttagatgcttaaaat 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  43797139 tttttacatttgttcagttgttgatgttttatttagatgcttaaaat 43797185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 12238589 - 12238527
Alignment:
Q  171 cgtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataag 233  Q
    |||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  12238589 cgttgggattggcttattttagagcttatgcaaataaataagcattaatgtattatttataag 12238527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 17317159 - 17317200
Alignment:
Q  171 cgtttggattggcttattttagagcttatgtaaataaataag 212  Q
    ||||||||||| |||||||| |||||||||||||||||||||    
T  17317159 cgtttggattgacttatttttgagcttatgtaaataaataag 17317200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 232
Target Start/End: Complemental strand, 32522129 - 32522090
Alignment:
Q  193 agcttatgtaaataaataagtattaatgtattatttataa 232  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  32522129 agcttatgtaaataaataagtttttatgtattatttataa 32522090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 236
Target Start/End: Original strand, 40301354 - 40301397
Alignment:
Q  193 agcttatgtaaataaataagtattaatgtattatttataagttt 236  Q
    |||||||| |||||||||||| || |||||||||||||||||||    
T  40301354 agcttatgcaaataaataagtttttatgtattatttataagttt 40301397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 42839424 - 42839361
Alignment:
Q  173 tttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataagttt 236  Q
    ||||| |||| ||||| | ||||||||||| |||||||||| || |||||||||| ||||||||    
T  42839424 tttgggttggtttattattgagcttatgtagataaataagtttttatgtattattcataagttt 42839361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 236
Target Start/End: Original strand, 32366154 - 32366195
Alignment:
Q  195 cttatgtaaataaataagtattaatgtattatttataagttt 236  Q
    |||||| |||||||||||| || |||||||||||||||||||    
T  32366154 cttatgcaaataaataagtttttatgtattatttataagttt 32366195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 2401748 - 2401708
Alignment:
Q  164 aaggggtcgtttggattggcttattttagagcttatgtaaa 204  Q
    ||||| ||||||||||| |||||||||||||||||| ||||    
T  2401748 aagggctcgtttggattagcttattttagagcttatataaa 2401708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 12224019 - 12223971
Alignment:
Q  165 aggggtcgtttggattggcttattttagagcttatgtaaataaataagt 213  Q
    |||| ||||||||||||||||||||| ||||||||| ||| || |||||    
T  12224019 agggttcgtttggattggcttatttttgagcttatgcaaagaattaagt 12223971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 173 - 236
Target Start/End: Original strand, 227688 - 227751
Alignment:
Q  173 tttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataagttt 236  Q
    ||||||||||||||||||||||||||||  |||||||||| ||||||||| |||||||||||||    
T  227688 tttggattggcttattttagagcttatgcgaataaataagcattaatgtagtatttataagttt 227751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 9781196 - 9781255
Alignment:
Q  172 gtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttata 231  Q
    |||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  9781196 gtttggattgacttattttagagcttatgcaaataaataagcattaatgtattatttata 9781255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 172 - 236
Target Start/End: Original strand, 28280690 - 28280754
Alignment:
Q  172 gtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataagttt 236  Q
    ||||||||| ||||||||||||||||||| ||||||||| | ||| |||||||||||||||||||    
T  28280690 gtttggattagcttattttagagcttatgcaaataaatatgcatttatgtattatttataagttt 28280754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 236
Target Start/End: Original strand, 1184762 - 1184828
Alignment:
Q  170 tcgtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataagttt 236  Q
    ||||||| |||||||||||||| |||||||| ||||||||||| |||||||||| ||||| ||||||    
T  1184762 tcgtttgaattggcttattttaaagcttatgcaaataaataagcattaatgtatcatttaaaagttt 1184828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 236
Target Start/End: Original strand, 2669630 - 2669693
Alignment:
Q  173 tttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataagttt 236  Q
    |||||||||| |||||||| |||||||| |||||||||||   |||||||||||||||||||||    
T  2669630 tttggattggtttattttatagcttatgcaaataaataagctctaatgtattatttataagttt 2669693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 34286668 - 34286607
Alignment:
Q  172 gtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataag 233  Q
    |||||||||| |||||||| |||||||||||||||||||||  || |||||||||| |||||    
T  34286668 gtttggattgacttatttttgagcttatgtaaataaataagcttttatgtattattcataag 34286607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 172 - 236
Target Start/End: Complemental strand, 31079271 - 31079207
Alignment:
Q  172 gtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataagttt 236  Q
    ||||||||| |||||||||||||||||||  |||||||| | ||| ||||||||||| |||||||    
T  31079271 gtttggattagcttattttagagcttatggtaataaatatgcatttatgtattatttttaagttt 31079207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 28879038 - 28879100
Alignment:
Q  171 cgtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataag 233  Q
    |||||| ||||||||||||| ||||||||| |||||||||||  || |||||||||| |||||    
T  28879038 cgtttgaattggcttatttttgagcttatgcaaataaataagcttttatgtattattcataag 28879100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 209
Target Start/End: Original strand, 35168361 - 35168399
Alignment:
Q  171 cgtttggattggcttattttagagcttatgtaaataaat 209  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  35168361 cgtttggattggcttatttttgagcttatgtaaataaat 35168399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 2563363 - 2563403
Alignment:
Q  196 ttatgtaaataaataagtattaatgtattatttataagttt 236  Q
    ||||| |||||||||| ||||||||||||||||||||||||    
T  2563363 ttatgcaaataaataaatattaatgtattatttataagttt 2563403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 204
Target Start/End: Original strand, 14942391 - 14942423
Alignment:
Q  172 gtttggattggcttattttagagcttatgtaaa 204  Q
    |||||||||||||||||||||||||||||||||    
T  14942391 gtttggattggcttattttagagcttatgtaaa 14942423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 35453392 - 35453456
Alignment:
Q  173 tttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataagttta 237  Q
    |||| |||||||||||||  |||||||| |||||||||||  || |||||||||| |||||||||    
T  35453392 tttgaattggcttattttttagcttatgcaaataaataagcttttatgtattattcataagttta 35453456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 177 - 236
Target Start/End: Complemental strand, 402188 - 402129
Alignment:
Q  177 gattggcttattttagagcttatgtaaataaataagtattaatgtattatttataagttt 236  Q
    ||||| ||||||||  |||| | |||||||||||||| || |||||||||||||||||||    
T  402188 gattgtcttattttttagctaacgtaaataaataagtttttatgtattatttataagttt 402129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 232
Target Start/End: Original strand, 30973991 - 30974030
Alignment:
Q  193 agcttatgtaaataaataagtattaatgtattatttataa 232  Q
    |||||||||||||||| ||| |||||||||||||||||||    
T  30973991 agcttatgtaaataaagaagcattaatgtattatttataa 30974030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 236
Target Start/End: Original strand, 42102109 - 42102152
Alignment:
Q  193 agcttatgtaaataaataagtattaatgtattatttataagttt 236  Q
    |||||||| |||||||||||| || |||||||||||||||||||    
T  42102109 agcttatgcaaataaataagtttttatgtattatttataagttt 42102152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 236
Target Start/End: Complemental strand, 42363400 - 42363357
Alignment:
Q  193 agcttatgtaaataaataagtattaatgtattatttataagttt 236  Q
    |||||||| |||||||||||| || |||||||||||||||||||    
T  42363400 agcttatgcaaataaataagtttttatgtattatttataagttt 42363357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 204
Target Start/End: Original strand, 2563323 - 2563357
Alignment:
Q  170 tcgtttggattggcttattttagagcttatgtaaa 204  Q
    ||||||||||||||||||||||||| |||||||||    
T  2563323 tcgtttggattggcttattttagaggttatgtaaa 2563357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 18396916 - 18396953
Alignment:
Q  171 cgtttggattggcttattttagagcttatgtaaataaa 208  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  18396916 cgtttggattggcttatttttgagcttatgcaaataaa 18396953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 200
Target Start/End: Original strand, 30973955 - 30973984
Alignment:
Q  171 cgtttggattggcttattttagagcttatg 200  Q
    ||||||||||||||||||||||||||||||    
T  30973955 cgtttggattggcttattttagagcttatg 30973984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 218333 - 218293
Alignment:
Q  196 ttatgtaaataaataagtattaatgtattatttataagttt 236  Q
    |||||||||||||||| | || |||||||||||||||||||    
T  218333 ttatgtaaataaataaatttttatgtattatttataagttt 218293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 694893 - 694853
Alignment:
Q  196 ttatgtaaataaataagtattaatgtattatttataagttt 236  Q
    |||||||||||||||| | || |||||||||||||||||||    
T  694893 ttatgtaaataaataaatttttatgtattatttataagttt 694853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 699102 - 699062
Alignment:
Q  196 ttatgtaaataaataagtattaatgtattatttataagttt 236  Q
    |||||||||||||||| | || |||||||||||||||||||    
T  699102 ttatgtaaataaataaatttttatgtattatttataagttt 699062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 731956 - 731916
Alignment:
Q  196 ttatgtaaataaataagtattaatgtattatttataagttt 236  Q
    |||||||||||||||| | || |||||||||||||||||||    
T  731956 ttatgtaaataaataaatttttatgtattatttataagttt 731916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 855852 - 855812
Alignment:
Q  196 ttatgtaaataaataagtattaatgtattatttataagttt 236  Q
    |||||||||||||||| | || |||||||||||||||||||    
T  855852 ttatgtaaataaataaatttttatgtattatttataagttt 855812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 11988202 - 11988242
Alignment:
Q  196 ttatgtaaataaataagtattaatgtattatttataagttt 236  Q
    ||||| |||||||||||| || |||||||||||||||||||    
T  11988202 ttatgcaaataaataagtttttatgtattatttataagttt 11988242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 232
Target Start/End: Complemental strand, 19925469 - 19925433
Alignment:
Q  196 ttatgtaaataaataagtattaatgtattatttataa 232  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  19925469 ttatgcaaataaataagcattaatgtattatttataa 19925433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 232
Target Start/End: Complemental strand, 37410993 - 37410957
Alignment:
Q  196 ttatgtaaataaataagtattaatgtattatttataa 232  Q
    |||||||||||||||||| || |||||||||||||||    
T  37410993 ttatgtaaataaataagtttttatgtattatttataa 37410957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 232
Target Start/End: Original strand, 43577226 - 43577262
Alignment:
Q  196 ttatgtaaataaataagtattaatgtattatttataa 232  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  43577226 ttatgcaaataaataaatattaatgtattatttataa 43577262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 38524069 - 38524129
Alignment:
Q  172 gtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataa 232  Q
    |||||||||  |||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  38524069 gtttggattaacttattttagagtttatgcaaataaataagtattaatgtattatttataa 38524129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 37601131 - 37601071
Alignment:
Q  173 tttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataag 233  Q
    ||||||||| |||||||||||||||||| ||||||||||   |||||||||||||||||||    
T  37601131 tttggattgacttattttagagcttatgcaaataaataaacgttaatgtattatttataag 37601071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 43376678 - 43376737
Alignment:
Q  172 gtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataag 233  Q
    ||||||||| |||||||||| |||||||| ||||||||  || |||||||||||||||||||    
T  43376678 gtttggattagcttattttacagcttatgcaaataaat--gtcttaatgtattatttataag 43376737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 45331401 - 45331361
Alignment:
Q  171 cgtttggattggcttattttagagcttatgtaaataaataa 211  Q
    ||||||||||||||||||||  |||||||||||||||||||    
T  45331401 cgtttggattggcttattttttagcttatgtaaataaataa 45331361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 232
Target Start/End: Original strand, 3645305 - 3645344
Alignment:
Q  193 agcttatgtaaataaataagtattaatgtattatttataa 232  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  3645305 agcttatgtaaataaataagtttttatgtattatttataa 3645344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 232
Target Start/End: Original strand, 20894505 - 20894544
Alignment:
Q  193 agcttatgtaaataaataagtattaatgtattatttataa 232  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  20894505 agcttatgtaaataaataagtttttatgtattatttataa 20894544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 232
Target Start/End: Original strand, 29614196 - 29614235
Alignment:
Q  193 agcttatgtaaataaataagtattaatgtattatttataa 232  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  29614196 agcttatgtaaataaataagtttttatgtattatttataa 29614235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 200
Target Start/End: Complemental strand, 2086811 - 2086782
Alignment:
Q  171 cgtttggattggcttattttagagcttatg 200  Q
    ||||||||||||||||||||||||||||||    
T  2086811 cgtttggattggcttattttagagcttatg 2086782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 236
Target Start/End: Complemental strand, 4257383 - 4257342
Alignment:
Q  195 cttatgtaaataaataagtattaatgtattatttataagttt 236  Q
    |||||| |||||||||||| || |||||||||||||||||||    
T  4257383 cttatgcaaataaataagtttttatgtattatttataagttt 4257342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 200
Target Start/End: Original strand, 4974277 - 4974306
Alignment:
Q  171 cgtttggattggcttattttagagcttatg 200  Q
    ||||||||||||||||||||||||||||||    
T  4974277 cgtttggattggcttattttagagcttatg 4974306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 19307817 - 19307874
Alignment:
Q  171 cgtttggattggcttattttagagcttatgtaaataaataagtattaatgtattattt 228  Q
    ||||||||||  | |||||||||| ||| ||||||||||||| ||||| |||||||||    
T  19307817 cgtttggattaacatattttagagtttacgtaaataaataagcattaaagtattattt 19307874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 45049480 - 45049415
Alignment:
Q  171 cgtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataagttt 236  Q
    ||||||||||| ||||||||| || ||||  ||||||| ||| |||||| |||| |||||||||||    
T  45049480 cgtttggattgacttattttaaagtttatacaaataaacaagcattaatatattgtttataagttt 45049415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 29270512 - 29270472
Alignment:
Q  172 gtttggattggcttattttagagcttatgtaaataaataag 212  Q
    |||||||||||||||||||  |||||||| |||||||||||    
T  29270512 gtttggattggcttattttttagcttatgcaaataaataag 29270472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 165 - 232
Target Start/End: Complemental strand, 2691 - 2624
Alignment:
Q  165 aggggtcgtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataa 232  Q
    ||||| |||||| |||| |||||||||||| ||||| ||||||| |||||||||||||||||||||||    
T  2691 aggggccgtttgtattgacttattttagagtttatgcaaataaagaagtattaatgtattatttataa 2624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 167 - 234
Target Start/End: Complemental strand, 22397415 - 22397348
Alignment:
Q  167 gggtcgtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataagt 234  Q
    |||||||||| ||||  ||||||||||||||||  |||||||||| ||||||||||||||||||||||    
T  22397415 gggtcgtttgaattgatttattttagagcttatacaaataaataaatattaatgtattatttataagt 22397348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 43983481 - 43983426
Alignment:
Q  178 attggcttattttagagcttatgtaaataaataagtattaatgtattatttataag 233  Q
    ||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||    
T  43983481 attggcttattttagagcttatacaaataaataagcattaatgtattatttataag 43983426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 7148752 - 7148814
Alignment:
Q  171 cgtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataag 233  Q
    |||||||||||||||||||| ||||||||| |||||||||||  || |||||||||| |||||    
T  7148752 cgtttggattggcttatttttgagcttatgcaaataaataagcttttatgtattattcataag 7148814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 2141621 - 2141682
Alignment:
Q  171 cgtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataa 232  Q
    |||||| ||| ||||||||||||||||||| |||||||||||  || |||| ||||||||||    
T  2141621 cgtttgaattagcttattttagagcttatgcaaataaataagcttttatgtgttatttataa 2141682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 26206459 - 26206398
Alignment:
Q  172 gtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataag 233  Q
    |||||||||  |||||||||||| ||||| ||||||||| || || ||||||||||||||||    
T  26206459 gtttggattatcttattttagagtttatgcaaataaatatgtctttatgtattatttataag 26206398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 227
Target Start/End: Complemental strand, 48591538 - 48591474
Alignment:
Q  163 taaggggtcgtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatt 227  Q
    |||||| ||||| ||||||||||||||  ||||||||| |||||||||||| || || |||||||    
T  48591538 taagggttcgttaggattggcttatttctgagcttatgcaaataaataagtttttatatattatt 48591474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 54412153 - 54412093
Alignment:
Q  171 cgtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttata 231  Q
    ||||||||||||||||||||  | |||||| |||||||||| | || ||||||||||||||    
T  54412153 cgtttggattggcttattttttaacttatgcaaataaataaatttttatgtattatttata 54412093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 236
Target Start/End: Complemental strand, 2702799 - 2702756
Alignment:
Q  193 agcttatgtaaataaataagtattaatgtattatttataagttt 236  Q
    |||||||| | |||||||||||||| ||||||||||||||||||    
T  2702799 agcttatgcacataaataagtattagtgtattatttataagttt 2702756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 232
Target Start/End: Original strand, 15184549 - 15184588
Alignment:
Q  193 agcttatgtaaataaataagtattaatgtattatttataa 232  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  15184549 agcttatgtaaataaataagtttttatgtattatttataa 15184588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 221
Target Start/End: Original strand, 55852998 - 55853041
Alignment:
Q  178 attggcttattttagagcttatgtaaataaataagtattaatgt 221  Q
    ||||| ||||||||||  ||||||||||||||||||||||||||    
T  55852998 attggtttattttagaatttatgtaaataaataagtattaatgt 55853041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 233
Target Start/End: Complemental strand, 52700626 - 52700588
Alignment:
Q  195 cttatgtaaataaataagtattaatgtattatttataag 233  Q
    ||||||||||||||||||| || ||||||||||||||||    
T  52700626 cttatgtaaataaataagtctttatgtattatttataag 52700588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 236
Target Start/End: Original strand, 9201655 - 9201696
Alignment:
Q  195 cttatgtaaataaataagtattaatgtattatttataagttt 236  Q
    |||||| |||||||||||| || |||||||||||||||||||    
T  9201655 cttatgcaaataaataagtttttatgtattatttataagttt 9201696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 9319211 - 9319170
Alignment:
Q  171 cgtttggattggcttattttagagcttatgtaaataaataag 212  Q
    ||||||| ||||||||||||  ||||||||||||||||||||    
T  9319211 cgtttggtttggcttattttttagcttatgtaaataaataag 9319170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 52274225 - 52274164
Alignment:
Q  172 gtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataag 233  Q
    ||||| ||||||||||||| ||||||||| ||||||||||   || |||||||||| |||||    
T  52274225 gtttgaattggcttatttttgagcttatgcaaataaataaacttttatgtattattgataag 52274164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 825663 - 825703
Alignment:
Q  172 gtttggattggcttattttagagcttatgtaaataaataag 212  Q
    |||||||||||||| |||| ||||||||| |||||||||||    
T  825663 gtttggattggcttctttttgagcttatgcaaataaataag 825703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 200
Target Start/End: Complemental strand, 2702834 - 2702806
Alignment:
Q  172 gtttggattggcttattttagagcttatg 200  Q
    |||||||||||||||||||||||||||||    
T  2702834 gtttggattggcttattttagagcttatg 2702806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 28663408 - 28663464
Alignment:
Q  171 cgtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatt 227  Q
    ||||||||||| |||||||| ||||||||| |||||||| ||  || ||||||||||    
T  28663408 cgtttggattgacttatttttgagcttatgcaaataaatgagcttttatgtattatt 28663464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 236
Target Start/End: Original strand, 35010220 - 35010256
Alignment:
Q  200 gtaaataaataagtattaatgtattatttataagttt 236  Q
    |||||||||||||| || |||||||||||||||||||    
T  35010220 gtaaataaataagtttttatgtattatttataagttt 35010256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 43136722 - 43136662
Alignment:
Q  172 gtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataa 232  Q
    |||||||||| |||||||| |||||||||  ||||||||||| || |||| ||||| ||||    
T  43136722 gtttggattgacttatttttgagcttatgcgaataaataagtctttatgtgttattcataa 43136662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 236
Target Start/End: Original strand, 8410120 - 8410194
Alignment:
Q  162 ttaaggggtcgtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataagttt 236  Q
    ||||||| ||||||| ||| |||||||||||||| |||| |||||||||||| || |||||||||| ||||||||    
T  8410120 ttaagggctcgtttgaattagcttattttagagcctatgcaaataaataagtttttatgtattattcataagttt 8410194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 6337856 - 6337800
Alignment:
Q  177 gattggcttattttagagcttatgtaaataaataagtattaatgtattatttataag 233  Q
    ||||| ||||||||||||||||||||||||||||||  || |||||||||| |||||    
T  6337856 gattgacttattttagagcttatgtaaataaataagcttttatgtattattcataag 6337800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 48819281 - 48819341
Alignment:
Q  173 tttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataag 233  Q
    |||||||||||||||||| ||||||||| |||||||| ||  ||||||||||||| |||||    
T  48819281 tttggattggcttatttttgagcttatgcaaataaatgagctttaatgtattattcataag 48819341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 193 - 236
Target Start/End: Complemental strand, 15235244 - 15235201
Alignment:
Q  193 agcttatgtaaataaataagtattaatgtattatttataagttt 236  Q
    ||||||||||||||||||||| || |||||||||||||||||||    
T  15235244 agcttatgtaaataaataagtttttatgtattatttataagttt 15235201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 193 - 236
Target Start/End: Original strand, 15791386 - 15791429
Alignment:
Q  193 agcttatgtaaataaataagtattaatgtattatttataagttt 236  Q
    ||||||||||||||||||||| || |||||||||||||||||||    
T  15791386 agcttatgtaaataaataagtttttatgtattatttataagttt 15791429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 228
Target Start/End: Original strand, 28870199 - 28870261
Alignment:
Q  166 ggggtcgtttggattggcttattttagagcttatgtaaataaataagtattaatgtattattt 228  Q
    |||| ||||| |||||||||||||| ||||||||| ||||||||||  ||| |||||||||||    
T  28870199 gggggcgtttagattggcttatttttgagcttatgcaaataaataaacatttatgtattattt 28870261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 236
Target Start/End: Original strand, 29333428 - 29333462
Alignment:
Q  202 aaataaataagtattaatgtattatttataagttt 236  Q
    |||||||||||||||||||||||||||||||||||    
T  29333428 aaataaataagtattaatgtattatttataagttt 29333462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 234
Target Start/End: Complemental strand, 37148177 - 37148136
Alignment:
Q  193 agcttatgtaaataaataagtattaatgtattatttataagt 234  Q
    |||||||| ||||||||||| |||||||||||||||||||||    
T  37148177 agcttatgcaaataaataagcattaatgtattatttataagt 37148136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 234
Target Start/End: Complemental strand, 37157002 - 37156961
Alignment:
Q  193 agcttatgtaaataaataagtattaatgtattatttataagt 234  Q
    |||||||| ||||||||||| |||||||||||||||||||||    
T  37157002 agcttatgcaaataaataagcattaatgtattatttataagt 37156961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 236
Target Start/End: Complemental strand, 22088495 - 22088452
Alignment:
Q  193 agcttatgtaaataaataagtattaatgtattatttataagttt 236  Q
    ||||||||||||||||||||| || |||||||||||| ||||||    
T  22088495 agcttatgtaaataaataagtttttatgtattatttacaagttt 22088452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 236
Target Start/End: Complemental strand, 32497355 - 32497312
Alignment:
Q  193 agcttatgtaaataaataagtattaatgtattatttataagttt 236  Q
    |||||||| |||||||||||| || |||||||||||||||||||    
T  32497355 agcttatgcaaataaataagtttttatgtattatttataagttt 32497312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 236
Target Start/End: Original strand, 51162271 - 51162314
Alignment:
Q  193 agcttatgtaaataaataagtattaatgtattatttataagttt 236  Q
    |||||||| ||||||||||| |||||||||||||||| ||||||    
T  51162271 agcttatgcaaataaataagcattaatgtattatttacaagttt 51162314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 212
Target Start/End: Original strand, 37431145 - 37431187
Alignment:
Q  170 tcgtttggattggcttattttagagcttatgtaaataaataag 212  Q
    ||||||||||||||||||||| |||||| || |||||||||||    
T  37431145 tcgtttggattggcttatttttgagcttgtgcaaataaataag 37431187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 236
Target Start/End: Original strand, 41003391 - 41003432
Alignment:
Q  195 cttatgtaaataaataagtattaatgtattatttataagttt 236  Q
    |||||| |||||||||||| || |||||||||||||||||||    
T  41003391 cttatgcaaataaataagtttttatgtattatttataagttt 41003432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 32810875 - 32810915
Alignment:
Q  196 ttatgtaaataaataagtattaatgtattatttataagttt 236  Q
    |||||||||||||||||  || |||||||||||||||||||    
T  32810875 ttatgtaaataaataagccttcatgtattatttataagttt 32810915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 213
Target Start/End: Original strand, 38781059 - 38781095
Alignment:
Q  177 gattggcttattttagagcttatgtaaataaataagt 213  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  38781059 gattggcttatttttgagcttatgcaaataaataagt 38781095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 45267446 - 45267486
Alignment:
Q  172 gtttggattggcttattttagagcttatgtaaataaataag 212  Q
    |||||||||| |||||||| ||||||||| |||||||||||    
T  45267446 gtttggattgacttatttttgagcttatgcaaataaataag 45267486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 51409811 - 51409748
Alignment:
Q  173 tttggatt-ggcttattttagagcttatgtaaataaataagtattaatgtattatttataagttt 236  Q
    |||||||| |||||||||| ||||||||| |||||||||||| |  |||||||||| ||||||||    
T  51409811 tttggattaggcttatttt-gagcttatgcaaataaataagtttgtatgtattattcataagttt 51409748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 2034335 - 2034270
Alignment:
Q  171 cgtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataagttt 236  Q
    ||||||||||||||| |||| ||||||||| |||||||||||  || |||||||||||||||||||    
T  2034335 cgtttggattggcttgtttttgagcttatgcaaataaataagcttttatgtattatttataagttt 2034270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 171 - 232
Target Start/End: Complemental strand, 32165366 - 32165305
Alignment:
Q  171 cgtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataa 232  Q
    |||||||||| ||||||||||||| ||||| |||||||||||| || |||||||||||||||    
T  32165366 cgtttggattagcttattttagagtttatgaaaataaataagtttttatgtattatttataa 32165305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 171 - 202
Target Start/End: Complemental strand, 8011166 - 8011135
Alignment:
Q  171 cgtttggattggcttattttagagcttatgta 202  Q
    ||||||||||||||||||||||||||||||||    
T  8011166 cgtttggattggcttattttagagcttatgta 8011135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 236
Target Start/End: Complemental strand, 10184413 - 10184370
Alignment:
Q  193 agcttatgtaaataaataagtattaatgtattatttataagttt 236  Q
    ||||||||||||||||||||| || || ||||||||||||||||    
T  10184413 agcttatgtaaataaataagtttttatctattatttataagttt 10184370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 10755385 - 10755324
Alignment:
Q  172 gtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataag 233  Q
    |||||||||||||||||||  |||||||| |||||||||||  || | |||||||| |||||    
T  10755385 gtttggattggcttattttttagcttatgcaaataaataagcttttacgtattattcataag 10755324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 17914901 - 17914945
Alignment:
Q  160 agttaaggggtcgtttggattggcttattttagagcttatgtaaa 204  Q
    ||||||||| |||||||||||  ||||||||||||||||| ||||    
T  17914901 agttaagggctcgtttggattaacttattttagagcttatataaa 17914945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 40696981 - 40697043
Alignment:
Q  171 cgtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataag 233  Q
    |||||| |||| |||||||| ||||||||| |||||||||||| || ||||||||||||||||    
T  40696981 cgtttgaattgacttatttttgagcttatgcaaataaataagtttttatgtattatttataag 40697043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 1942990 - 1943045
Alignment:
Q  171 cgtttggattggcttattttagagcttatgtaaataaataagtattaatgtattat 226  Q
    |||||||||||||||||||| ||||||||| || ||||||||| || |||||||||    
T  1942990 cgtttggattggcttatttttgagcttatgcaagtaaataagtttttatgtattat 1943045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 193 - 236
Target Start/End: Original strand, 15413994 - 15414037
Alignment:
Q  193 agcttatgtaaataaataagtattaatgtattatttataagttt 236  Q
    |||||||| |||||||||||||||||||||||||| ||||||||    
T  15413994 agcttatgcaaataaataagtattaatgtattattgataagttt 15414037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 38461386 - 38461323
Alignment:
Q  173 tttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataagttt 236  Q
    ||||||||  |||||||||||||||||  |||||||||||  || |||||||||||||||||||    
T  38461386 tttggattaacttattttagagcttataaaaataaataagcctttatgtattatttataagttt 38461323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 42706776 - 42706838
Alignment:
Q  171 cgtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataag 233  Q
    |||||||||||||||||||| ||||||||| |||||||||||  || | |||||||| |||||    
T  42706776 cgtttggattggcttatttttgagcttatgcaaataaataagcttttaagtattattcataag 42706838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 236
Target Start/End: Original strand, 28357333 - 28357397
Alignment:
Q  172 gtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataagttt 236  Q
    ||||||||| |||||||||| |||||||| ||||||||| |  |  |||||||||||||||||||    
T  28357333 gtttggattagcttattttaaagcttatgcaaataaatatgcctatatgtattatttataagttt 28357397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 232
Target Start/End: Complemental strand, 5203517 - 5203478
Alignment:
Q  193 agcttatgtaaataaataagtattaatgtattatttataa 232  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  5203517 agcttatgcaaataaataagtatttatgtattatttataa 5203478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 236
Target Start/End: Complemental strand, 25332322 - 25332279
Alignment:
Q  193 agcttatgtaaataaataagtattaatgtattatttataagttt 236  Q
    |||||||| ||||||||||| |||||| ||||||||||||||||    
T  25332322 agcttatgcaaataaataagcattaatatattatttataagttt 25332279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 236
Target Start/End: Original strand, 33757090 - 33757133
Alignment:
Q  193 agcttatgtaaataaataagtattaatgtattatttataagttt 236  Q
    |||||||| |||||||||||| || |||||||||||||||||||    
T  33757090 agcttatgcaaataaataagtttttatgtattatttataagttt 33757133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 41534604 - 41534665
Alignment:
Q  172 gtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataag 233  Q
    |||||||||||||||||||  || ||||| |||||||||||  || |||||||||| |||||    
T  41534604 gtttggattggcttatttttcagattatgcaaataaataagcttttatgtattattcataag 41534665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 26003002 - 26003042
Alignment:
Q  196 ttatgtaaataaataagtattaatgtattatttataagttt 236  Q
    ||||| |||||||||||| || |||||||||||||||||||    
T  26003002 ttatgcaaataaataagtttttatgtattatttataagttt 26003042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 47511024 - 47511085
Alignment:
Q  172 gtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataag 233  Q
    ||||||||||||||||||| ||||||||| |||||||||||  || |||||||||| |||||    
T  47511024 gtttggattggcttatttttgagcttatgcaaataaataagcttttatgtattattcataag 47511085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 172 - 236
Target Start/End: Original strand, 29378626 - 29378690
Alignment:
Q  172 gtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataagttt 236  Q
    |||||||||||||||| || ||||||||| |||||||||||  || ||||||||||||| |||||    
T  29378626 gtttggattggcttatctttgagcttatgcaaataaataagcttttatgtattatttatgagttt 29378690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 193 - 236
Target Start/End: Complemental strand, 24371490 - 24371447
Alignment:
Q  193 agcttatgtaaataaataagtattaatgtattatttataagttt 236  Q
    |||||||| |||||||||||| ||||||||||||||||||||||    
T  24371490 agcttatgcaaataaataagttttaatgtattatttataagttt 24371447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 43818982 - 43818923
Alignment:
Q  172 gtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataag 233  Q
    ||||||||| ||||||||||||||||||| ||||||||  || || ||||||||||||||||    
T  43818982 gtttggattagcttattttagagcttatgcaaataaat--gtctttatgtattatttataag 43818923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 195 - 232
Target Start/End: Complemental strand, 18260927 - 18260890
Alignment:
Q  195 cttatgtaaataaataagtattaatgtattatttataa 232  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  18260927 cttatgtaaataaataagtattaatgtattagttataa 18260890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 21027597 - 21027548
Alignment:
Q  193 agcttatgtaaataaataagtattaatgtattatttataagtttagtaag 242  Q
    |||||||||||| |||||||| || |||||||||||||||||||| ||||    
T  21027597 agcttatgtaaacaaataagtttttatgtattatttataagtttattaag 21027548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 30094836 - 30094775
Alignment:
Q  172 gtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataag 233  Q
    ||||||||| ||||||||||||||||||  ||||||||  || ||||| |||||||||||||    
T  30094836 gtttggattagcttattttagagcttatacaaataaatgtgtcttaatatattatttataag 30094775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 233
Target Start/End: Original strand, 35809094 - 35809132
Alignment:
Q  195 cttatgtaaataaataagtattaatgtattatttataag 233  Q
    |||||| ||||||||||| ||||||||||||||||||||    
T  35809094 cttatgcaaataaataagcattaatgtattatttataag 35809132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 42083500 - 42083458
Alignment:
Q  194 gcttatgtaaataaataagtattaatgtattatttataagttt 236  Q
    |||||||||||||||||||| || |||||||||| ||||||||    
T  42083500 gcttatgtaaataaataagtttttatgtattattcataagttt 42083458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 46743931 - 46743989
Alignment:
Q  172 gtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttat 230  Q
    ||||||||||||||| ||| ||||| ||| |||||||||||  || |||||||||||||    
T  46743931 gtttggattggcttacttttgagctcatgcaaataaataagattttatgtattatttat 46743989  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 204
Target Start/End: Original strand, 22032729 - 22032761
Alignment:
Q  172 gtttggattggcttattttagagcttatgtaaa 204  Q
    ||||||||| |||||||||||||||||||||||    
T  22032729 gtttggattagcttattttagagcttatgtaaa 22032761  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 199
Target Start/End: Original strand, 35809056 - 35809084
Alignment:
Q  171 cgtttggattggcttattttagagcttat 199  Q
    |||||||||||||||||||||||||||||    
T  35809056 cgtttggattggcttattttagagcttat 35809084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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