View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10848_low_3 (Length: 250)
Name: NF10848_low_3
Description: NF10848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10848_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 128 - 207
Target Start/End: Original strand, 38968671 - 38968750
Alignment:
| Q |
128 |
aaatcaatattactgacgcatcaggtacaacatgtttgagctatttacagttttttaatccttcagttaccttgaaatat |
207 |
Q |
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| T |
38968671 |
aaatcaatattactgtcgcatcaggtacaacatgtttgagctatttacagttttttaatccttcagctaccttgaaatat |
38968750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 38968544 - 38968604
Alignment:
| Q |
1 |
caggttaatactaacatgttcaatttgcaggtttactttctagttaatcttgcagaatccg |
61 |
Q |
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| T |
38968544 |
caggttaatactaacatgttcaatttgcaggtttactttctagttaatcttgcagaatccg |
38968604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 19033790 - 19033731
Alignment:
| Q |
1 |
caggttaatactaacatgttcaa-tttgcaggtttactttctagttaatcttgcagaatc |
59 |
Q |
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| T |
19033790 |
caggttaatactaacgtgttcaattttgcaggtttactgtctagtttgttttgcagaatc |
19033731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 47595208 - 47595257
Alignment:
| Q |
158 |
catgtttgagctatttacagttttttaatccttcagttaccttgaaatat |
207 |
Q |
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| T |
47595208 |
catgtttgagctatttactgttttttaatccttcagttaccttgaaatat |
47595257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 16085232 - 16085174
Alignment:
| Q |
2 |
aggttaatactaacatgttcaat-ttgcaggtttactttctagttaatcttgcagaatc |
59 |
Q |
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| T |
16085232 |
aggttaatactaacgtgttcaatgttgcaggtttactttctagtttgttttgcagaatc |
16085174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 16088155 - 16088097
Alignment:
| Q |
2 |
aggttaatactaacatgttcaattt-gcaggtttactttctagttaatcttgcagaatc |
59 |
Q |
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| T |
16088155 |
aggttaatactaacgtgttcaattttgcaggtttactttctagtttgttttgcagaatc |
16088097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 3640935 - 3640975
Alignment:
| Q |
1 |
caggttaatactaacatgttcaat-ttgcaggtttactttc |
40 |
Q |
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| T |
3640935 |
caggttaatactaacgtgttcaatcttgcaggtttactttc |
3640975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 26968945 - 26968887
Alignment:
| Q |
1 |
caggttaatactaacatgttcaattt-gcaggtttactttctagttaatcttgcagaat |
58 |
Q |
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| T |
26968945 |
caggttaatactaacacattcaattttgcaggtttactttctagtttgttttgcagaat |
26968887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 3328808 - 3328840
Alignment:
| Q |
208 |
ataaaggctaaactacacttttcgccccctatg |
240 |
Q |
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| T |
3328808 |
ataaaggctaaactgcacttttcgccccctatg |
3328840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 240
Target Start/End: Original strand, 26628024 - 26628052
Alignment:
| Q |
212 |
aggctaaactacacttttcgccccctatg |
240 |
Q |
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| T |
26628024 |
aggctaaactacacttttcgccccctatg |
26628052 |
T |
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