View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10849_1 (Length: 669)

Name: NF10849_1
Description: NF10849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10849_1
NF10849_1
[»] chr8 (2 HSPs)
chr8 (601-669)||(12933811-12933879)
chr8 (624-661)||(36999937-36999974)
[»] chr4 (3 HSPs)
chr4 (601-669)||(14177081-14177149)
chr4 (601-669)||(28608726-28608794)
chr4 (609-662)||(20706182-20706234)
[»] chr7 (1 HSPs)
chr7 (594-631)||(6692086-6692123)
[»] chr6 (2 HSPs)
chr6 (594-631)||(796698-796735)
chr6 (594-631)||(8273092-8273129)
[»] chr5 (1 HSPs)
chr5 (594-631)||(19944036-19944073)


Alignment Details
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 601 - 669
Target Start/End: Original strand, 12933811 - 12933879
Alignment:
Q  601 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggat 669  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  |||||||||||||    
T  12933811 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggat 12933879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 624 - 661
Target Start/End: Original strand, 36999937 - 36999974
Alignment:
Q  624 catggagatttggaagaggagatttatatggagcaacc 661  Q
    ||||| || |||||||||||||||||||||||||||||    
T  36999937 catggtgacttggaagaggagatttatatggagcaacc 36999974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 601 - 669
Target Start/End: Original strand, 14177081 - 14177149
Alignment:
Q  601 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggat 669  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  |||||||||||||    
T  14177081 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggat 14177149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 601 - 669
Target Start/End: Complemental strand, 28608794 - 28608726
Alignment:
Q  601 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggat 669  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  |||||||||||||    
T  28608794 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggat 28608726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 609 - 662
Target Start/End: Original strand, 20706182 - 20706234
Alignment:
Q  609 aaaactgcatttcttcatggagatttggaagaggagatttatatggagcaacca 662  Q
    |||| ||||||||| ||||||||||| ||| |||||| ||||||||||||||||    
T  20706182 aaaaatgcatttctacatggagatttagaaaaggaga-ttatatggagcaacca 20706234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 594 - 631
Target Start/End: Original strand, 6692086 - 6692123
Alignment:
Q  594 gagcagttggatgtgaaaactgcatttcttcatggaga 631  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  6692086 gagcagttagatgtgaagactgcatttcttcatggaga 6692123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 594 - 631
Target Start/End: Complemental strand, 796735 - 796698
Alignment:
Q  594 gagcagttggatgtgaaaactgcatttcttcatggaga 631  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  796735 gagcagttagatgtgaagactgcatttcttcatggaga 796698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 594 - 631
Target Start/End: Original strand, 8273092 - 8273129
Alignment:
Q  594 gagcagttggatgtgaaaactgcatttcttcatggaga 631  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  8273092 gagcagttagatgtgaagactgcatttcttcatggaga 8273129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 594 - 631
Target Start/End: Original strand, 19944036 - 19944073
Alignment:
Q  594 gagcagttggatgtgaaaactgcatttcttcatggaga 631  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  19944036 gagcagttagatgtgaagactgcatttcttcatggaga 19944073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University