View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10849_10 (Length: 312)

Name: NF10849_10
Description: NF10849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10849_10
NF10849_10
[»] chr5 (7 HSPs)
chr5 (1-304)||(41548201-41548504)
chr5 (3-94)||(41509652-41509743)
chr5 (3-94)||(41519878-41519969)
chr5 (3-98)||(41515637-41515732)
chr5 (3-91)||(41524567-41524655)
chr5 (3-59)||(41469914-41469970)
chr5 (104-188)||(41509765-41509849)
[»] chr7 (3 HSPs)
chr7 (39-98)||(16638334-16638393)
chr7 (39-98)||(17457245-17457304)
chr7 (39-98)||(17595910-17595969)


Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 41548201 - 41548504
Alignment:
Q  1 ttataactttcttgtactttcttcattttctgacaaatttcctctcttttctttaactcttcctcagcctttaaccttgagagtttctccatttgaagtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41548201 ttataactttcttgtactttcttcattttctgacaaatttcctctcttttctttaactcttcctcagcctttaaccttgagagtttctccatttgaagtt 41548300  T
Q  101 gttgtctttccatttcaacattcttatgtaagtgttgaatctggtctttgagtgccaaatcccttctcaccaaaacaccttcaactctttcataagtttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41548301 gttgtctttccatttcaacattcttatgtaagtgttgaatctggtctttgagtgccaaatcccttctcaccaaaacaccttcaactctttcataagtttc 41548400  T
Q  201 catctgtaaagatccaagcaatacttgaacaagatctgggatagtcattccttctaagtcaagagttgtcataggaaatgctccaacttcatcatcttca 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  41548401 catctgtaaagatccaagcaatacttgaacaagatctgggatagtcattccttctaagtcaagagttgtcataggaaatgctccaacttcatcatcttcg 41548500  T
Q  301 tctc 304  Q
    ||||    
T  41548501 tctc 41548504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 41509652 - 41509743
Alignment:
Q  3 ataactttcttgtactttcttcattttctgacaaatttcctctcttttctttaactcttcctcagcctttaaccttgagagtttctccattt 94  Q
    ||||| ||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||    
T  41509652 ataacgttcttgtactttcttccctttctgaaaaatttcctctcttttctttaactcttcctcagcctttatccttgcaagtttctccattt 41509743  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 41519878 - 41519969
Alignment:
Q  3 ataactttcttgtactttcttcattttctgacaaatttcctctcttttctttaactcttcctcagcctttaaccttgagagtttctccattt 94  Q
    ||||| ||||||||||||||||  ||||||||||| ||||||||||||||| ||||||||||| |||| || |||||  |||||||||||||    
T  41519878 ataacgttcttgtactttcttccctttctgacaaagttcctctcttttcttaaactcttcctcggcctgtatccttgcaagtttctccattt 41519969  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 98
Target Start/End: Original strand, 41515637 - 41515732
Alignment:
Q  3 ataactttcttgtactttcttcattttctgacaaatttcctctcttttctttaactcttcctcagcctttaaccttgagagtttctccatttgaag 98  Q
    |||||||||||| |||||||||  ||||| |||||| || ||||||||||| |||||   |||||| |  ||||||||||||||||||| ||||||    
T  41515637 ataactttcttgaactttcttccctttctcacaaatctcttctcttttcttaaactcagactcagcgtacaaccttgagagtttctccagttgaag 41515732  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 41524567 - 41524655
Alignment:
Q  3 ataactttcttgtactttcttcattttctgacaaatttcctctcttttctttaactcttcctcagcctttaaccttgagagtttctcca 91  Q
    |||||||||||| |||||||||  ||| | |||||| || ||||||||||| |||||   |||||| | ||||||||||||||||||||    
T  41524567 ataactttcttgaactttcttccctttttcacaaatctcttctcttttcttaaactcagactcagcatataaccttgagagtttctcca 41524655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 41469914 - 41469970
Alignment:
Q  3 ataactttcttgtactttcttcattttctgacaaatttcctctcttttctttaactc 59  Q
    ||||||||||| |||||||||   ||||| ||||||||||||||||||||| |||||    
T  41469914 ataactttcttttactttcttacctttctcacaaatttcctctcttttcttaaactc 41469970  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 188
Target Start/End: Original strand, 41509765 - 41509849
Alignment:
Q  104 gtctttccatttcaacattcttatgtaagtgttgaatctggtctttgagtgccaaatcccttctcaccaaaacaccttcaactct 188  Q
    |||| ||||| ||||||||||  || ||| ||||| | |||||| ||||| | | ||| || |||||||||||||||||||||||    
T  41509765 gtctctccatatcaacattctgctgcaagcgttgagtttggtctctgagtccaacatctctactcaccaaaacaccttcaactct 41509849  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 16638393 - 16638334
Alignment:
Q  39 ttcctctcttttctttaactcttcctcagcctttaaccttgagagtttctccatttgaag 98  Q
    ||||||||||||||| ||||||| |||||| | ||||||||  |||||||||||||||||    
T  16638393 ttcctctcttttcttaaactctttctcagcatgtaaccttgcaagtttctccatttgaag 16638334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 17457245 - 17457304
Alignment:
Q  39 ttcctctcttttctttaactcttcctcagcctttaaccttgagagtttctccatttgaag 98  Q
    ||||||||||||||| ||||||| |||||| | ||||||||  |||||||||||||||||    
T  17457245 ttcctctcttttcttaaactctttctcagcatgtaaccttgcaagtttctccatttgaag 17457304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 17595969 - 17595910
Alignment:
Q  39 ttcctctcttttctttaactcttcctcagcctttaaccttgagagtttctccatttgaag 98  Q
    ||||||||||||||| ||||||| |||||| | ||||||||  |||||||||||||||||    
T  17595969 ttcctctcttttcttaaactctttctcagcatgtaaccttgcaagtttctccatttgaag 17595910  T

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