View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10849_8 (Length: 328)
Name: NF10849_8
Description: NF10849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10849_8 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 13 - 328
Target Start/End: Original strand, 31370855 - 31371168
Alignment:
| Q |
13 |
aacctgtgtcatttacaataggtacattcacaacttttgaaaattcttcaaactacgaaatcagtcgaatttatactaaatatctaaaatccaatttgat |
112 |
Q |
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| T |
31370855 |
aacctgtgtcatttacaataggtacattca--acttttgaaaattcttcaaacaacgaaatcagtcgaatttatactaaatatctaaaaaccaatttgat |
31370952 |
T |
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| Q |
113 |
ttcaccattatgtcacttgattcttcgtgatattaatattttagaaatggacaatatccatgaaatgtattgtacggttactcttcaagatagaatactt |
212 |
Q |
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| T |
31370953 |
ttcaccattatgtcacttgattcttcgtgatattaatattttagaaatggacaatatccatgaaatgtattgtacggttactcttcaagatagaatgctt |
31371052 |
T |
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| Q |
213 |
tttcgatccccataaccgtgcttctaaggaagtgtaagacttcaacgaagaaagttgcttctacttacaaaaagggacgcatgattttattcttgtctag |
312 |
Q |
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| T |
31371053 |
tttcgatccccataaccatccttctagggaagtgtaagacttcaacgaagaaagttgcttctacttacaaaaagggacgcgtgattttattcttgtctag |
31371152 |
T |
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| Q |
313 |
agttattacatgaaaa |
328 |
Q |
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| T |
31371153 |
agttattacatgaaaa |
31371168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 328
Target Start/End: Original strand, 31287672 - 31287990
Alignment:
| Q |
20 |
gtcatttacaataggtacattca-caacttttgaaaattcttcaaactacgaaatcagtcgaatttatactaaatatctaaaatccaatttgatttcacc |
118 |
Q |
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| T |
31287672 |
gtcatttacaataggtagattcttcaacttctgaaaattctctaaagtgagaaattggtcgtatttatattaaatttctaaaaaccaaattgatgtcact |
31287771 |
T |
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| Q |
119 |
attatgtcacttg-attcttcgtgatattaatattttagaaatggacaatatccatgaaatgtattgtacggttactcttcaaga---tagaata----- |
209 |
Q |
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| T |
31287772 |
ggtatgttgcttggatgcttcatgatattaagattttggaaatggacaggatctatgaaatgttttgtacaattactctttgagagattacaattacatc |
31287871 |
T |
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| Q |
210 |
ctttttcgatccccataaccgtgcttctaaggaagtgtaagacttcaacgaagaaagttgcttctacttacaaaaagggacgcatgattttattcttgtc |
309 |
Q |
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| T |
31287872 |
cttttccgatcctcttcaacatccttctagtgaagtgtaaaacttcaacgaaaaaagtttctactaattataaaaagggaggtttgattttattctcttc |
31287971 |
T |
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| Q |
310 |
tagagttattacatgaaaa |
328 |
Q |
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| T |
31287972 |
tagagttattacatgaaaa |
31287990 |
T |
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