View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10849_9 (Length: 328)
Name: NF10849_9
Description: NF10849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10849_9 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 1025903 - 1025588
Alignment:
| Q |
1 |
attgaaaacaaaattaatggttgggttgacttgcaaggttaagagcaaaaaatgaagtgtccgttggcctaggatttggactcacgtctaaaattccatg |
100 |
Q |
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| T |
1025903 |
attgaaaacaaaattaatggttgggttgacttgcaaggttaagagcaaaaaatgaagtgtccgttggcctaggatttggactcacgtctaaaattccatg |
1025804 |
T |
|
| Q |
101 |
atgttattgatgcaattata-----tataatacataatctcaatta-taatttaggaacttaagactataagttcagaaaattaatttaannnnnnngat |
194 |
Q |
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| T |
1025803 |
atgttattgatgcaattatataaagtataatacataatctcaattattaatttaggaacttaagactataagttcacaaaattaatttaatttttttgat |
1025704 |
T |
|
| Q |
195 |
accattaatgtagattagacggttactgttaaaaatattaacattgcctacgcaacccacaaacacagtgcaaagttgaatagtnnnnnnnttaaaagca |
294 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1025703 |
accattaatgtagattagacggttactgctaaaaatattaacattgcctacgcaacccacaaacacagtgcaaagttgaatagtaaaaaaattaaaagca |
1025604 |
T |
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| Q |
295 |
atcaagttttattcat |
310 |
Q |
| |
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|||||||||||||||| |
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| T |
1025603 |
atcaagttttattcat |
1025588 |
T |
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