View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1084_high_15 (Length: 413)

Name: NF1084_high_15
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1084_high_15
NF1084_high_15
[»] chr1 (1 HSPs)
chr1 (11-379)||(48482951-48483324)
[»] chr4 (1 HSPs)
chr4 (287-322)||(14198212-14198247)
[»] chr3 (1 HSPs)
chr3 (216-282)||(47664942-47665009)
[»] chr8 (2 HSPs)
chr8 (288-321)||(2205184-2205217)
chr8 (283-320)||(35464875-35464912)
[»] chr2 (3 HSPs)
chr2 (288-321)||(41811770-41811803)
chr2 (284-320)||(26004122-26004158)
chr2 (285-317)||(43279044-43279076)
[»] chr5 (1 HSPs)
chr5 (274-318)||(12671285-12671329)


Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 11 - 379
Target Start/End: Original strand, 48482951 - 48483324
Alignment:
Q  11 caaaggcatgtatgatgaaagcaccaaa-----acagatgtagcagtgtcttctgaattgatggttgctcctgctccaaagcggtcctcaaactgacttg 105  Q
    ||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48482951 caaaggcatgtatgatgaaagcaccaaagaatcacagatgtagcagtgtcttctgaattgatggttgctcctgctccaaagcggtcctcaaactgacttg 48483050  T
Q  106 ctagcaagaaaccggttgtcgtgtctaacggaagagcactccagcatgcataaaaatcatgcattgagatatttgggactacattggtggatttttatat 205  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48483051 ctagcaagaaaccggttgtcgtgtctaacggaagagcactcaagcatgcataaaaatcatgcattgagatatttgggactacattggtggatttttatat 48483150  T
Q  206 actttataggctaaactgacggactttatatagtttaaggactatttagtatattttataatgtagggattaaattgaagagtgatagtttagagattaa 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48483151 actttataggctaaactgacggactttatatagtttaaggactatttaatatattttataatgtagggattaaattgaagagtgatagtttagagattaa 48483250  T
Q  306 attgatggtttattcttgaattataccgtaatctataatgaattcttaaattatgcagtaatctacgacgaatg 379  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  48483251 attgatggtttattcttgaattatacagtaatctataatgaattcttaaattatgcagtaatctacgacgaatg 48483324  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 287 - 322
Target Start/End: Complemental strand, 14198247 - 14198212
Alignment:
Q  287 gtgatagtttagagattaaattgatggtttattctt 322  Q
    ||||||||||||||||||||||||| ||||||||||    
T  14198247 gtgatagtttagagattaaattgatcgtttattctt 14198212  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 216 - 282
Target Start/End: Complemental strand, 47665009 - 47664942
Alignment:
Q  216 ctaaactgacggactttatatagtttaaggactatttagtata-ttttataatgtagggattaaattg 282  Q
    ||||| ||||||| |||||||||||| | |||||||| ||||| ||||||| | ||||||||||||||    
T  47665009 ctaaattgacggattttatatagtttgaagactatttggtatatttttatagtatagggattaaattg 47664942  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 321
Target Start/End: Complemental strand, 2205217 - 2205184
Alignment:
Q  288 tgatagtttagagattaaattgatggtttattct 321  Q
    ||||||||||| ||||||||||||||||||||||    
T  2205217 tgatagtttagggattaaattgatggtttattct 2205184  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 320
Target Start/End: Original strand, 35464875 - 35464912
Alignment:
Q  283 aagagtgatagtttagagattaaattgatggtttattc 320  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  35464875 aagagtgatattttagagactaaattgatggtttattc 35464912  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 321
Target Start/End: Complemental strand, 41811803 - 41811770
Alignment:
Q  288 tgatagtttagagattaaattgatggtttattct 321  Q
    |||||||||||||||| |||||||||||||||||    
T  41811803 tgatagtttagagattgaattgatggtttattct 41811770  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 320
Target Start/End: Complemental strand, 26004158 - 26004122
Alignment:
Q  284 agagtgatagtttagagattaaattgatggtttattc 320  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  26004158 agagtgataatttagagactaaattgatggtttattc 26004122  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 317
Target Start/End: Complemental strand, 43279076 - 43279044
Alignment:
Q  285 gagtgatagtttagagattaaattgatggttta 317  Q
    ||||||||||||||||| |||||||||||||||    
T  43279076 gagtgatagtttagagactaaattgatggttta 43279044  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 318
Target Start/End: Original strand, 12671285 - 12671329
Alignment:
Q  274 attaaattgaagagtgatagtttagagattaaattgatggtttat 318  Q
    ||||| ||||||||||||| || | ||||||||||||||||||||    
T  12671285 attaagttgaagagtgataattgaaagattaaattgatggtttat 12671329  T

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