View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1084_high_18 (Length: 401)
Name: NF1084_high_18
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1084_high_18 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 79 - 401
Target Start/End: Complemental strand, 25011720 - 25011396
Alignment:
| Q |
79 |
tgagatgga-catcatcaagatgcacacaggcagaggatcgttgactggatcagtgctgctggtggtactgcaggtgcatttgatgttacaaccaaaggg |
177 |
Q |
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| T |
25011720 |
tgagatggatcataatcaagatgcacacaggcagaggatcgttgactggatcagtgctgctggtggtactgcaggtgcatttgatgttacaaccaaaggg |
25011621 |
T |
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| Q |
178 |
attcttcactctgtgagtactcaacttgacggtttcaataatttctcttcaaacttactcttcaatcctgtggaattcttcgaatagtgtatagcactta |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25011620 |
attcttcactctgtgagtactcaacttgacggtttcaataatttctcttcaaacttactcttcaatcctgtggaattcttcgaatagtgtatagcacttt |
25011521 |
T |
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| Q |
278 |
cacgaaacgataatttgacaaagcaacgtg-tttcagatatactagtttcaccagcttagtggaatttgtttacaatctttttgtagcaagacaacaatc |
376 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25011520 |
ttcgaaacgataatttgacaaagcaacgtgttttcagatatactagtttcaccagcttagtggaatttgtttacaatctttttgtagcaagacaacaatc |
25011421 |
T |
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| Q |
377 |
tactatgtttcttgagcttttgttt |
401 |
Q |
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||||||||||||||||||||||||| |
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| T |
25011420 |
tactatgtttcttgagcttttgttt |
25011396 |
T |
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