View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1084_high_27 (Length: 352)

Name: NF1084_high_27
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1084_high_27
NF1084_high_27
[»] chr3 (4 HSPs)
chr3 (99-217)||(49234533-49234651)
chr3 (99-229)||(49233950-49234080)
chr3 (208-270)||(49234447-49234509)
chr3 (220-270)||(49233876-49233926)
[»] chr1 (2 HSPs)
chr1 (99-229)||(50862397-50862527)
chr1 (220-263)||(50862551-50862594)
[»] chr2 (3 HSPs)
chr2 (132-229)||(24455752-24455848)
chr2 (220-270)||(1615171-1615221)
chr2 (220-270)||(24455872-24455922)
[»] chr8 (3 HSPs)
chr8 (156-265)||(14839077-14839187)
chr8 (132-234)||(43227984-43228089)
chr8 (220-270)||(43228108-43228158)
[»] chr7 (1 HSPs)
chr7 (156-265)||(27962503-27962613)


Alignment Details
Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 99 - 217
Target Start/End: Complemental strand, 49234651 - 49234533
Alignment:
Q  99 ggcatgtatttataatgctactatagtcttctgccaagatatatgcttatggaatgcgtttctttattttcatatccaaatgtgtgcttaactattcaga 198  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  49234651 ggcatgtatttacaatgctactatagtcttcttccaagatatatgcttatggaatgcgtttctttattttcatatccagatgtgtgcttaattattcaga 49234552  T
Q  199 gctggttcaaggtaatttt 217  Q
    |||||||||||||||||||    
T  49234551 gctggttcaaggtaatttt 49234533  T

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Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 99 - 229
Target Start/End: Complemental strand, 49234080 - 49233950
Alignment:
Q  99 ggcatgtattt-ataatgctactatagtcttctgccaagatatatgcttatggaatgcgtttctttattttcatatccaaatgtgtgcttaactattcag 197  Q
    ||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||  ||||||| |||||||||||| ||||||||||||||||||||    
T  49234080 ggcatgtattttataatgctactatagtcttcttccaaaatatatgcttatggaatgtctttcttttttttcatatccatatgtgtgcttaactattcag 49233981  T
Q  198 agctggttcaaggtaattttcttgcataattt 229  Q
    ||||||||||||||||||||| ||||||||||    
T  49233980 agctggttcaaggtaattttc-tgcataattt 49233950  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 270
Target Start/End: Complemental strand, 49234509 - 49234447
Alignment:
Q  208 aggtaattttcttgcataatttagagttggttttctgcatgtggactaatgtagtgcaacagc 270  Q
    |||| ||||||||||||||||||||| ||||||||||||||||| |||||||| |||| ||||    
T  49234509 aggtgattttcttgcataatttagagctggttttctgcatgtgggctaatgtaatgcagcagc 49234447  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 49233926 - 49233876
Alignment:
Q  220 tgcataatttagagttggttttctgcatgtggactaatgtagtgcaacagc 270  Q
    |||||||||||||| |||||||| |||||||||||||||||||||| ||||    
T  49233926 tgcataatttagagctggttttcggcatgtggactaatgtagtgcagcagc 49233876  T

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Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 99 - 229
Target Start/End: Original strand, 50862397 - 50862527
Alignment:
Q  99 ggcatgtattt-ataatgctactatagtcttctgccaagatatatgcttatggaatgcgtttctttattttcatatccaaatgtgtgcttaactattcag 197  Q
    ||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||  |||||| ||||||||||||||||||||||||| ||||||||    
T  50862397 ggcatgtattttataatgctactatagtcttcttccaaaatatatgcttatggaatgtttttcttcattttcatatccaaatgtgtgcttatctattcag 50862496  T
Q  198 agctggttcaaggtaattttcttgcataattt 229  Q
    ||||||||||||||| ||||| ||||||||||    
T  50862497 agctggttcaaggtagttttc-tgcataattt 50862527  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 263
Target Start/End: Original strand, 50862551 - 50862594
Alignment:
Q  220 tgcataatttagagttggttttctgcatgtggactaatgtagtg 263  Q
    |||||||||||||| || ||||| ||||||||||||||||||||    
T  50862551 tgcataatttagagctgattttcggcatgtggactaatgtagtg 50862594  T

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Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 132 - 229
Target Start/End: Original strand, 24455752 - 24455848
Alignment:
Q  132 ccaagatatatgcttatggaatgcgtttctttattttcatatccaaatgtgtgcttaactattcagagctggttcaaggtaattttcttgcataattt 229  Q
    |||| ||||||||||||| |||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24455752 ccaaaatatatgcttatgaaatgtgtttctttattttcatatacagatgtgtgcttaactattcagagctggttcaaggtaattttc-tgcataattt 24455848  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 1615221 - 1615171
Alignment:
Q  220 tgcataatttagagttggttttctgcatgtggactaatgtagtgcaacagc 270  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||| ||||    
T  1615221 tgcataatttagagctggttttctacatgtggactaatgtagtgcagcagc 1615171  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 220 - 270
Target Start/End: Original strand, 24455872 - 24455922
Alignment:
Q  220 tgcataatttagagttggttttctgcatgtggactaatgtagtgcaacagc 270  Q
    |||||||||||||| |||||||| ||||||||||||||||| |||||||||    
T  24455872 tgcataatttagagctggttttcggcatgtggactaatgtaatgcaacagc 24455922  T

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Target: chr8 (Bit Score: 57; Significance: 9e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 156 - 265
Target Start/End: Original strand, 14839077 - 14839187
Alignment:
Q  156 gtttctttattttcatatccaaatgt--gtgcttaactattcagagctggttcaaggtaattttcttgcataatttagagttggttttctgcatgtggac 253  Q
    |||||||||||||||||| || ||||  |||||||||||||||||||||||||||||||||||||   |||| ||||||| |||||||| |||| |||||    
T  14839077 gtttctttattttcatattcagatgtttgtgcttaactattcagagctggttcaaggtaattttc-gacatagtttagagctggttttcagcatatggac 14839175  T
Q  254 taatgtagtgca 265  Q
    ||||||| ||||    
T  14839176 taatgtaatgca 14839187  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 132 - 234
Target Start/End: Original strand, 43227984 - 43228089
Alignment:
Q  132 ccaagatatatgcttatggaat--gcgtttctttattttcatatccaaatgt--gtgcttaactattcagagctggttcaaggtaattttcttgcataat 227  Q
    |||| |||||||||||||||||  | ||||||||||||||||||||| ||||  |||||||||||||||||| |||||||||||||||||| ||||||||    
T  43227984 ccaaaatatatgcttatggaatatgtgtttctttattttcatatccagatgtttgtgcttaactattcagagttggttcaaggtaattttc-tgcataat 43228082  T
Q  228 ttagagt 234  Q
    || ||||    
T  43228083 ttggagt 43228089  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 220 - 270
Target Start/End: Original strand, 43228108 - 43228158
Alignment:
Q  220 tgcataatttagagttggttttctgcatgtggactaatgtagtgcaacagc 270  Q
    |||||||||||||||||| |||| |||||||||||||||||||||| ||||    
T  43228108 tgcataatttagagttggctttcggcatgtggactaatgtagtgcagcagc 43228158  T

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Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 156 - 265
Target Start/End: Complemental strand, 27962613 - 27962503
Alignment:
Q  156 gtttctttattttcatatccaaatgt--gtgcttaactattcagagctggttcaaggtaattttcttgcataatttagagttggttttctgcatgtggac 253  Q
    |||||||||||||||||| || ||||  |||||||||||||||||||||||||||||||||||||   |||| ||||||| |||||||| |||| |||||    
T  27962613 gtttctttattttcatattcagatgtttgtgcttaactattcagagctggttcaaggtaattttc-gacatagtttagagctggttttcagcatatggac 27962515  T
Q  254 taatgtagtgca 265  Q
    ||||||| ||||    
T  27962514 taatgtaatgca 27962503  T

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