View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1084_high_28 (Length: 350)

Name: NF1084_high_28
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1084_high_28
NF1084_high_28
[»] chr3 (4 HSPs)
chr3 (208-340)||(49234377-49234509)
chr3 (99-217)||(49234533-49234651)
chr3 (99-229)||(49233950-49234080)
chr3 (220-340)||(49233806-49233926)
[»] chr1 (2 HSPs)
chr1 (99-229)||(50862397-50862527)
chr1 (220-340)||(50862551-50862671)
[»] chr8 (3 HSPs)
chr8 (156-333)||(14839077-14839255)
chr8 (220-333)||(43228108-43228221)
chr8 (132-234)||(43227984-43228089)
[»] chr7 (1 HSPs)
chr7 (156-333)||(27962435-27962613)
[»] chr2 (3 HSPs)
chr2 (220-329)||(24455872-24455981)
chr2 (220-329)||(1615112-1615221)
chr2 (132-229)||(24455752-24455848)


Alignment Details
Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 208 - 340
Target Start/End: Complemental strand, 49234509 - 49234377
Alignment:
Q  208 aggtaattttcttgcataatttagagttggttttctgcatgtggactaatgtagtgcaacagccgtgttttggtactgcagctgctacatagtggcattt 307  Q
    |||| ||||||||||||||||||||| ||||||||||||||||| |||||||| |||| |||| ||||||||||||||||||||||||||||||||||||    
T  49234509 aggtgattttcttgcataatttagagctggttttctgcatgtgggctaatgtaatgcagcagcagtgttttggtactgcagctgctacatagtggcattt 49234410  T
Q  308 tttcctccctgtgttctgatttgtctatctgtg 340  Q
    |||||||||||||||||||||||||||| ||||    
T  49234409 tttcctccctgtgttctgatttgtctatttgtg 49234377  T

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Target: chr3; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 99 - 217
Target Start/End: Complemental strand, 49234651 - 49234533
Alignment:
Q  99 ggcatgtatttataatgctactatagtcttctgccaagatatatgcttatggaatgcgtttctttattttcatatccaaatgtgtgcttaactattcaga 198  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  49234651 ggcatgtatttacaatgctactatagtcttcttccaagatatatgcttatggaatgcgtttctttattttcatatccagatgtgtgcttaattattcaga 49234552  T
Q  199 gctggttcaaggtaatttt 217  Q
    |||||||||||||||||||    
T  49234551 gctggttcaaggtaatttt 49234533  T

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Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 99 - 229
Target Start/End: Complemental strand, 49234080 - 49233950
Alignment:
Q  99 ggcatgtattt-ataatgctactatagtcttctgccaagatatatgcttatggaatgcgtttctttattttcatatccaaatgtgtgcttaactattcag 197  Q
    ||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||  ||||||| |||||||||||| ||||||||||||||||||||    
T  49234080 ggcatgtattttataatgctactatagtcttcttccaaaatatatgcttatggaatgtctttcttttttttcatatccatatgtgtgcttaactattcag 49233981  T
Q  198 agctggttcaaggtaattttcttgcataattt 229  Q
    ||||||||||||||||||||| ||||||||||    
T  49233980 agctggttcaaggtaattttc-tgcataattt 49233950  T

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Target: chr3; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 220 - 340
Target Start/End: Complemental strand, 49233926 - 49233806
Alignment:
Q  220 tgcataatttagagttggttttctgcatgtggactaatgtagtgcaacagccgtgttttggtactgcagctgctacatagtggcattttttcctccctgt 319  Q
    |||||||||||||| |||||||| |||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  49233926 tgcataatttagagctggttttcggcatgtggactaatgtagtgcagcagcagtgttttggtactacagctgctacatagtggcattctttcctccctgt 49233827  T
Q  320 gttctgatttgtctatctgtg 340  Q
    ||| |||||||||||| ||||    
T  49233826 gttttgatttgtctatttgtg 49233806  T

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Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 99 - 229
Target Start/End: Original strand, 50862397 - 50862527
Alignment:
Q  99 ggcatgtattt-ataatgctactatagtcttctgccaagatatatgcttatggaatgcgtttctttattttcatatccaaatgtgtgcttaactattcag 197  Q
    ||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||  |||||| ||||||||||||||||||||||||| ||||||||    
T  50862397 ggcatgtattttataatgctactatagtcttcttccaaaatatatgcttatggaatgtttttcttcattttcatatccaaatgtgtgcttatctattcag 50862496  T
Q  198 agctggttcaaggtaattttcttgcataattt 229  Q
    ||||||||||||||| ||||| ||||||||||    
T  50862497 agctggttcaaggtagttttc-tgcataattt 50862527  T

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Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 220 - 340
Target Start/End: Original strand, 50862551 - 50862671
Alignment:
Q  220 tgcataatttagagttggttttctgcatgtggactaatgtagtgcaacagccgtgttttggtactgcagctgctacatagtggcattttttcctccctgt 319  Q
    |||||||||||||| || ||||| |||||||||||||||||||| | ||||  || |||||||||||||||| ||||||||||| |||||||||||||||    
T  50862551 tgcataatttagagctgattttcggcatgtggactaatgtagtgtatcagcactgctttggtactgcagctggtacatagtggcgttttttcctccctgt 50862650  T
Q  320 gttctgatttgtctatctgtg 340  Q
    |||||||||||||||| ||||    
T  50862651 gttctgatttgtctatttgtg 50862671  T

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Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 156 - 333
Target Start/End: Original strand, 14839077 - 14839255
Alignment:
Q  156 gtttctttattttcatatccaaatgt--gtgcttaactattcagagctggttcaaggtaattttcttgcataatttagagttggttttctgcatgtggac 253  Q
    |||||||||||||||||| || ||||  |||||||||||||||||||||||||||||||||||||   |||| ||||||| |||||||| |||| |||||    
T  14839077 gtttctttattttcatattcagatgtttgtgcttaactattcagagctggttcaaggtaattttcga-catagtttagagctggttttcagcatatggac 14839175  T
Q  254 taatgtagtgcaacagccgtgttttggtactgcagctgctacatagtggcattttttcctccctgtgttctgatttgtct 333  Q
    ||||||| |||| | || |||||||||||||||| ||||||| ||| ||  |||||||||||||  ||||||||||||||    
T  14839176 taatgtaatgcagccgcggtgttttggtactgcacctgctacgtagcggagttttttcctccctacgttctgatttgtct 14839255  T

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Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 220 - 333
Target Start/End: Original strand, 43228108 - 43228221
Alignment:
Q  220 tgcataatttagagttggttttctgcatgtggactaatgtagtgcaacagccgtgttttggtactgcagctgctacatagtggcattttttcctccctgt 319  Q
    |||||||||||||||||| |||| |||||||||||||||||||||| |||| ||||||| | ||||||||| |||| | ||||| ||||||||||||||     
T  43228108 tgcataatttagagttggctttcggcatgtggactaatgtagtgcagcagcagtgtttttgcactgcagcttctacctggtggcgttttttcctccctgc 43228207  T
Q  320 gttctgatttgtct 333  Q
    ||||||||||||||    
T  43228208 gttctgatttgtct 43228221  T

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Target: chr8; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 132 - 234
Target Start/End: Original strand, 43227984 - 43228089
Alignment:
Q  132 ccaagatatatgcttatggaat--gcgtttctttattttcatatccaaatgt--gtgcttaactattcagagctggttcaaggtaattttcttgcataat 227  Q
    |||| |||||||||||||||||  | ||||||||||||||||||||| ||||  |||||||||||||||||| |||||||||||||||||| ||||||||    
T  43227984 ccaaaatatatgcttatggaatatgtgtttctttattttcatatccagatgtttgtgcttaactattcagagttggttcaaggtaattttc-tgcataat 43228082  T
Q  228 ttagagt 234  Q
    || ||||    
T  43228083 ttggagt 43228089  T

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Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 156 - 333
Target Start/End: Complemental strand, 27962613 - 27962435
Alignment:
Q  156 gtttctttattttcatatccaaatgt--gtgcttaactattcagagctggttcaaggtaattttcttgcataatttagagttggttttctgcatgtggac 253  Q
    |||||||||||||||||| || ||||  |||||||||||||||||||||||||||||||||||||   |||| ||||||| |||||||| |||| |||||    
T  27962613 gtttctttattttcatattcagatgtttgtgcttaactattcagagctggttcaaggtaattttcga-catagtttagagctggttttcagcatatggac 27962515  T
Q  254 taatgtagtgcaacagccgtgttttggtactgcagctgctacatagtggcattttttcctccctgtgttctgatttgtct 333  Q
    ||||||| |||| | || |||||||||||||||| ||||||| ||| ||  |||||||||||||  ||||||||||||||    
T  27962514 taatgtaatgcagccgcggtgttttggtactgcacctgctacgtagcggagttttttcctccctacgttctgatttgtct 27962435  T

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Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 220 - 329
Target Start/End: Original strand, 24455872 - 24455981
Alignment:
Q  220 tgcataatttagagttggttttctgcatgtggactaatgtagtgcaacagccgtgttttggtactgcagctgctacatagtggcattttttcctccctgt 319  Q
    |||||||||||||| |||||||| ||||||||||||||||| ||||||||| ||||||||||| |||||||||||| |||||| |||||||||||||| |    
T  24455872 tgcataatttagagctggttttcggcatgtggactaatgtaatgcaacagcagtgttttggtattgcagctgctacgtagtggtattttttcctccctat 24455971  T
Q  320 gttctgattt 329  Q
    ||||||||||    
T  24455972 gttctgattt 24455981  T

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Target: chr2; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 220 - 329
Target Start/End: Complemental strand, 1615221 - 1615112
Alignment:
Q  220 tgcataatttagagttggttttctgcatgtggactaatgtagtgcaacagccgtgttttggtactgcagctgctacatagtggcattttttcctccctgt 319  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||| |||| ||||||||||| |||||||||||  ||||||||||||||| |||| ||    
T  1615221 tgcataatttagagctggttttctacatgtggactaatgtagtgcagcagcagtgttttggtattgcagctgctatgtagtggcattttttcttccccgt 1615122  T
Q  320 gttctgattt 329  Q
    ||||||||||    
T  1615121 gttctgattt 1615112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 132 - 229
Target Start/End: Original strand, 24455752 - 24455848
Alignment:
Q  132 ccaagatatatgcttatggaatgcgtttctttattttcatatccaaatgtgtgcttaactattcagagctggttcaaggtaattttcttgcataattt 229  Q
    |||| ||||||||||||| |||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24455752 ccaaaatatatgcttatgaaatgtgtttctttattttcatatacagatgtgtgcttaactattcagagctggttcaaggtaattttc-tgcataattt 24455848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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