View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1084_high_29 (Length: 347)
Name: NF1084_high_29
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1084_high_29 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 28 - 251
Target Start/End: Original strand, 6327090 - 6327313
Alignment:
| Q |
28 |
attggacatcagctaggtgagagtgggaccaacattatagataatatatgaatacaaacattatgatggaaatgaaataatgaaaactcttgttagaaat |
127 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6327090 |
attgtacatcagctaggtgagagtgggaccaacattatagataatatatgaatacaaacattatgatggaaatgaaataatgaaaactcttgttagaaat |
6327189 |
T |
|
| Q |
128 |
ggaaaaaattcaaactagtacttaaaccattttgtctacaatagtaacaataacctctaaacactactttccaatttttaagacacaatgccaaccacat |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6327190 |
ggaaaaaattcaaactagtacttaaaccattttgtctacaatagtaacaataacctctaaacactactttccaatttttaagacacaatgccaaccacat |
6327289 |
T |
|
| Q |
228 |
tgaacttcaactaggtgagggacc |
251 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
6327290 |
tgaacttcaactaggtgagggacc |
6327313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 28 - 251
Target Start/End: Original strand, 6349268 - 6349502
Alignment:
| Q |
28 |
attggacatcagctaggtgagagtgggaccaacattatagata----------atatatgaatacaaacatt-atgatggaaatgaaataatgaaaactc |
116 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
6349268 |
attgtacatcagctaggtgagagtgggaccaagattatatatatatatatgtaatatatgaatacaaacatttatgatggaaatgaaataatgaaaattc |
6349367 |
T |
|
| Q |
117 |
ttgttagaaatggaaaaaattcaaactagtacttaaaccattttgtctacaatagtaacaataacctctaaacactactttccaatttttaagacacaat |
216 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||| | |||| ||| |
|
|
| T |
6349368 |
ttgttagaaatggtaaaaattcaaactagtacttaaaccattttgtctaaatcagtaacaataaactctaaacactactttccaattttgatgacagaat |
6349467 |
T |
|
| Q |
217 |
gccaaccacattgaacttcaactaggtgagggacc |
251 |
Q |
| |
|
||||||||||||| ||||||||| |||| |||||| |
|
|
| T |
6349468 |
gccaaccacattgtacttcaacttggtgggggacc |
6349502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 38 - 206
Target Start/End: Original strand, 6334090 - 6334260
Alignment:
| Q |
38 |
agctaggtgagagtgggaccaacattatagataata-tatgaatacaaacattatgatggaaatgaaataatgaaaactcttgttagaaatggaaaaaat |
136 |
Q |
| |
|
||||||||| ||||||||| ||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
6334090 |
agctaggtgggagtgggac-aacattatatataataatattaatacaaacattatgatggaaatgaaataatgaaaactcttgttagaaatggtaaaaat |
6334188 |
T |
|
| Q |
137 |
tcaaactagtacttaaaccattttgtctacaatagtaacaataacc--tctaaacactactttccaattttt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||| ||||| |||||||||| ||| ||||||||| |
|
|
| T |
6334189 |
tcaaactagtacttaaaccattttgtctaaaacagtaacattaaccgatctaaacactgcttcccaattttt |
6334260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 6334037 - 6334098
Alignment:
| Q |
183 |
tctaaacactactttccaatttttaagacacaatgccaaccacattgaacttcaactaggtg |
244 |
Q |
| |
|
||||||||||| ||||||||||||| | |||||||||||||||||| |||| | ||||||| |
|
|
| T |
6334037 |
tctaaacactagtttccaatttttatgttacaatgccaaccacattgtacttaagctaggtg |
6334098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University