View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1084_high_30 (Length: 346)
Name: NF1084_high_30
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1084_high_30 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 67 - 333
Target Start/End: Complemental strand, 6267330 - 6267067
Alignment:
| Q |
67 |
aaatccttttatcggtgaaccataaaaaatacagttaaatttaattgatggtataaatttattataaataaaaatgagactgattaatctattccaaaat |
166 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
6267330 |
aaatccttttattggtgaaccataaaaaatacagttaaatttaattgatggtataaatttattataaataaaaatgagactgattaatctgttcc-aaat |
6267232 |
T |
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| Q |
167 |
tctgcaactcaccaaaattctgcaaaagatgcttgctgcaaatnnnnnnnttgtgacagattaatctattcccccatatctctatagttgaatgaaggaa |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6267231 |
tctgcaactcaccaaaattctgcaaaagatgcttgctgcaaataaaaaaattgtgacagattaatctattcccccatatctctatagttgaatgaaggaa |
6267132 |
T |
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| Q |
267 |
atggtactcatgatgnnnnnnnnnnnnaccaatggtactcgtgatgttgattagtgtgacatatata |
333 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
6267131 |
atggtactcatgatg--ttttttttttaccaatggtactcgtgatgttgattagtgtgacatatata |
6267067 |
T |
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